BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942728 Length=252 Score E Sequences producing significant alignments: (Bits) Value AT4G09550.1 | Symbols: ATGIP1, GIP1 | AtGCP3 interacting protei... 335 1e-91 > AT4G09550.1 | Symbols: ATGIP1, GIP1 | AtGCP3 interacting protein 1 | chr4:6039118-6040215 FORWARD LENGTH=500 Length=500 Score = 335 bits (181), Expect = 1e-91 Identities = 206/218 (94%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 13 TGATCAGTATGGATGAGGAAGCATCTAGGACTGCAAGAGAGTCACTAGAGCTTGTGTTTC 72 ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||| Sbjct 93 TGATCAGTATGGATGAGGAGGCATCTCGGACAGCAAGAGAGTCACTAGAGCTTGTGTTTC 152 Query 73 GCATGTCAAACATCTTGGACACGGGACTGGACCGGCATACTTTGTCAGTTCTCATAGCTC 132 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 153 GCATGTCAAACATCTTGGACACGGGTTTGGACCGGCATACTTTGTCAGTTCTCATAGCTC 212 Query 133 TTTGTGATCTTGGTGTTAACCCAGAGGCTCTAGCTACTGTTGTGAAGGAGCTTCGACGCG 192 |||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||| Sbjct 213 TTTGTGATCTTGGTGTTAACCCTGAAGCTCTAGCTACTGTTGTGAAAGAGCTTCGTCGCG 272 Query 193 AGTCTATCCCTGATTCTGTCACAACTACACCATC-ATA 229 |||||||||| |||||||||||||| |||||||| ||| Sbjct 273 AGTCTATCCCCGATTCTGTCACAACCACACCATCTATA 310 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11461046772 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5