BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942728
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09550.1 | Symbols: ATGIP1, GIP1 | AtGCP3 interacting protei... 335 1e-91
> AT4G09550.1 | Symbols: ATGIP1, GIP1 | AtGCP3 interacting protein
1 | chr4:6039118-6040215 FORWARD LENGTH=500
Length=500
Score = 335 bits (181), Expect = 1e-91
Identities = 206/218 (94%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 13 TGATCAGTATGGATGAGGAAGCATCTAGGACTGCAAGAGAGTCACTAGAGCTTGTGTTTC 72
||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||
Sbjct 93 TGATCAGTATGGATGAGGAGGCATCTCGGACAGCAAGAGAGTCACTAGAGCTTGTGTTTC 152
Query 73 GCATGTCAAACATCTTGGACACGGGACTGGACCGGCATACTTTGTCAGTTCTCATAGCTC 132
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 153 GCATGTCAAACATCTTGGACACGGGTTTGGACCGGCATACTTTGTCAGTTCTCATAGCTC 212
Query 133 TTTGTGATCTTGGTGTTAACCCAGAGGCTCTAGCTACTGTTGTGAAGGAGCTTCGACGCG 192
|||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||
Sbjct 213 TTTGTGATCTTGGTGTTAACCCTGAAGCTCTAGCTACTGTTGTGAAAGAGCTTCGTCGCG 272
Query 193 AGTCTATCCCTGATTCTGTCACAACTACACCATC-ATA 229
|||||||||| |||||||||||||| |||||||| |||
Sbjct 273 AGTCTATCCCCGATTCTGTCACAACCACACCATCTATA 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11461046772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5