BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942729
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09560.1 | Symbols: | Protease-associated (PA) RING/U-box z... 1847 0.0
> AT4G09560.1 | Symbols: | Protease-associated (PA) RING/U-box
zinc finger family protein | chr4:6041342-6043840 REVERSE LENGTH=1816
Length=1816
Score = 1847 bits (1000), Expect = 0.0
Identities = 1265/1393 (91%), Gaps = 17/1393 (1%)
Strand=Plus/Plus
Query 7 TTAAAGCTTAAGGAAACATGACT-CGTTCTTCGATTGCAATCTTGTCTCTGTTACTAATG 65
||||||||| || |||||||| | ||||||||||||| ||| || ||||||||||||||
Sbjct 143 TTAAAGCTTTAGAAAACATGA-TCCGTTCTTCGATTGTAATTTTATCTCTGTTACTAATT 201
Query 66 TCACACTTGGTTTCTGCAAAAATTCTATTGATAGGGAAGAACACATCTCTTTCCTTCGAC 125
||||||||||||||||||||| |||| ||||| || || | ||||||||| |||||||||
Sbjct 202 TCACACTTGGTTTCTGCAAAAGTTCTGTTGATCGGTAACAGCACATCTCTCTCCTTCGAC 261
Query 126 GACATCGAAGCCAATTTCACTCCGATGATTAAAAGATCGGATCAAGGCGGTGTGTTGTAT 185
||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 262 GACGTCGAAGCCACTTTCACTCCGATGATTAAGAGATCGGATCAAGGCGGTGTGTTGTAT 321
Query 186 GTAGCAGAGCCGCTCGATGCTTGTTCGGATTTGGTTAATACGGTGAATGTGAAAAATGGA 245
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 322 GTAGCAGAGCCACTCGATGCTTGTTCGGATTTGGTGAATACGGTGAATGTGAAAAATGGA 381
Query 246 TCAAGTGT-TCCTCCTCCGTATGTTTTGATTATCCGCGGTGGCTGTAGTTTTGAAGAGAA 304
| | ||| | ||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 382 ACTACTGTGT-CTCCTCCGTATGTGTTGATTATCCGCGGTGGTTGTAGTTTCGAAGATAA 440
Query 305 GATTAGGAATGCGCAAAAGGCTGGATATAAAGCTGCTATTGTTTATGATTATGAAGATTA 364
|||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 441 GATTAGGAATGCTCAAAAGGCTGGTTATAAAGCTGCTATTGTTTATGACTATGAAGATTT 500
Query 365 TGGGTTCTTAGTATCAATGGCTGGAAATCCCTCTGGTGTACTTATATATGGTACGTTTGT 424
||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 501 TGGGTTCTTAGTATCAATGGCAGGAAACCCCTCTGGTGTACTTATTTATGGTACGTTTGT 560
Query 425 CTCCAAAGCAACTGGGGAAGTAC-TAACAGAGTATGCGGGTCGTACCGATTTTGAAGTGT 483
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 561 CTCCAAAGCAACTGGGGAAGTACTTAA-AGAGTATGCGGGTCGTACCGATTTTGAAGTGT 619
Query 484 GGCTCATGCCAAGTTTCGAGACTTCAGCGTGGTCAATCATGGCTATCTCGTTCATATCTC 543
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 620 GGCTCATGCCAAGTTTCGAGACTTCAGCATGGTCAATCATGGCTATTTCTTTCATATCTC 679
Query 544 TCCTCGCTATGTCTGCGGTGCTCGCCACTTGCTTCTTTGTCCGTAGGCATCGAGTTAGGC 603
||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 680 TCCTCGCCATGTCGGCTGTGCTCGCTACTTGCTTCTTTGTCCGTAGGCATCGAGTTAGGC 739
Query 604 GCCGGCGTATTCTGGCTCTTAATGGCAATGACTTTCCTCGTATGGCCAAAAACTTGCTAA 663
| |||||||||||||||||||||||||||||||||| ||||||| |||||| | || |||
Sbjct 740 GTCGGCGTATTCTGGCTCTTAATGGCAATGACTTTCATCGTATGCCCAAAAGCATGATAA 799
Query 664 AACGCATGCCTACTACAATATTTAAGGGTGTTTGCGATGAAGCATCTACTTCTAT-TTCG 722
||| ||||||||||| |||||||| ||| |||| ||||||||| |||| ||||| || |
Sbjct 800 TACGTATGCCTACTACCATATTTAACGGTATTTGTGATGAAGCAACTACATCTATATT-G 858
Query 723 TG-TGCTATATGCATTGAGGATTATCG-CATCGGAGACAAGCTAAGGATCCTCCCTTGCC 780
|| ||| |||||| ||||| ||||| | | || ||||||||||||||||| |||||||
Sbjct 859 TGCTGC-ATATGCCTTGAGAATTAT-GAGAAAGGGGACAAGCTAAGGATCCTACCTTGCC 916
Query 781 ATCACAAATTTCATGTTGGATGTGTAGACTTGTGGCTTGGCCAAAGGAGATCATTTTGCC 840
|||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||
Sbjct 917 ATCACAAATTTCATGTTGCTTGTGTAGACTTGTGGCTTGGCCAGAGGAAATCCTTTTGCC 976
Query 841 CGGTTTGCAAACGCGATGCGAGAAGTATCAGCATTGATATGCCCGCATCAGAGCACACAC 900
||||||||||||||||||| ||||| ||||| | || | |||| |||||||||||||||
Sbjct 977 CGGTTTGCAAACGCGATGCAAGAAGCATCAGTACCGACAAGCCCCCATCAGAGCACACAC 1036
Query 901 CCTTGCTTACTCCTAGC-AATAGCATGACCCCGACGTCATCGTTTCTCTTATCATCATCC 959
|||| ||| ||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCTTTCTTTCTCGGA-CTCCTAGCATGACCCCGACGTCATCGTTTCTCTTATCATCATCC 1095
Query 960 TCCACAACCCCATTGCAGTCATCTCATGAGCTACCAATATTTATCAGAGTAGACCCTTCT 1019
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1096 TCCACAACCCCATTGCAGTCATCTCATGAGCTACCAATATCCATCAGAGTAGACCCTTCT 1155
Query 1020 TTACCATCCACCTCAATGCAGCCACACACAGTCCCTATGTATCTTTCCCACTCTCGCTCC 1079
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1156 TTACCATCCACCTCAATGCAGCCACACACAGTTCCTATGTATCTCTCCCACTCTCGCTCC 1215
Query 1080 CACACAAGCTTCCAAAATGGGTCATACCGCTTTTCCCGGCCTATACCAGTTAGCCGGAGT 1139
|||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 1216 CACACAAGCTTCCAAAATGGATCAAACCGATTTTCCCGGCCTATACCAGTTAGCCGGAGT 1275
Query 1140 TCAGCAGATCTCAGGAACGCCGTTTCCCAAAGATCTTACAACTCACCCCGCCAGGGTTCT 1199
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1276 TCAGCAGATCTCAGGAACGCCGTTTCCCAAAGATCTTACAACTCACCCCACCAGGTTTCT 1335
Query 1200 TTGCCTCGTTCCCTCCACTCAAGATATACGCACATACTTAGCCCAGGAAATGCATCAAGG 1259
|||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1336 TTGCCTCGTTTCCTCCACTCAAGATATACGCACATACTTGGCCCGGGAAATGCATCAAGA 1395
Query 1260 AGCTGGGTGGTTGGATCGTCAACAAGCCAGCGCGAGAATTCACTTCACCTAAACGACTCG 1319
||| ||| ||||| | || |||||||||||||||| |||||||||| | ||| ||||||
Sbjct 1396 AGCCAGGTTGTTGGGTTGTTAACAAGCCAGCGCGAGCATTCACTTCATCAAAATGACTCG 1455
Query 1320 CGCAGGTCTTTCCCTCACTTTTTGTCTGCGAGCTCTCT-ACCAGGCTGCTAAA-CTGTTA 1377
|||||||||||| ||||||| ||||||||||| || ||||||||| |||| | | |
Sbjct 1456 CGCAGGTCTTTCATTCACTTTGCATCTGCGAGCTC-CTTACCAGGCTGGTAAAACCGCAA 1514
Query 1378 AAAAGGTAACACC 1390
|||||||||||||
Sbjct 1515 AAAAGGTAACACC 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68473543380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5