BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942730 Length=735 Score E Sequences producing significant alignments: (Bits) Value AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, ... 265 5e-70 > AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, transmembrane | chr1:26688230-26691277 REVERSE LENGTH=2317 Length=2317 Score = 265 bits (143), Expect = 5e-70 Identities = 318/396 (80%), Gaps = 37/396 (9%) Strand=Plus/Plus Query 352 AGGCTCGGACCATACTTGTAAATCGAGCTGTTAGGAAGGGAGAGTGGCGGATTCCACCTT 411 ||||||| ||||||||||||||| |||||||||||||||||||| | |||||||||| Sbjct 1171 AGGCTCGTACCATACTTGTAAATGGAGCTGTTAGGAAGGGAGAGCGTTTGATTCCACCTC 1230 Query 412 CTTCATTTGAGATCTTGTTGCGGCTTACATTCCCTTCTTCATCCGCTAGAGTAAAGGCAA 471 ||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||| | Sbjct 1231 CTTCATTTGAGATCTTGTTGCGGCTTACATTCCCTGCATCATCTGCAAGAGTAAAGGCTA 1290 Query 472 CAAAGAGGTTTGAGG-AAGTTTATCCCTTGTTGAAAGAAGTAGC-C---CT--TGCACCA 524 || |||||||||||| || | ||||||||| |||||||||| || | || ||||||| Sbjct 1291 CAGAGAGGTTTGAGGCAA-TATATCCCTTGCTGAAAGAAGTGGCTCTTGCTGGTGCACCA 1349 Query 525 AAGAGTGCAA--CAGAAGGGA-AAG-CAGTGGAACAGATATTCACTTTTTC-CTTGAAAT 579 || |||| | || | | ||| || ||||||||||||||||| | || ||||| Sbjct 1350 G-GAA-GCAAGGC-GATGAAACAAGTCACAC-AACAGATATTCACTTTTGCTCT-GAAAT 1404 Query 580 TAGCTGGAGAAGGTGCTAGTGGTAACAAACGAAACATTGGTCTAGCCAAGGAAGCTGCAG 639 ||||||||||||| | || | | | | | |||||||||||||| ||| Sbjct 1405 TAGCTGGAGAAGG----A-----AAT---C----C-T-GTTTTAGCCAAGGAAGCTACAG 1446 Query 640 CAATCGCTATCTGGTCTGTGACAGAAAACGTTGATTGCTTTAAGCACTGGGATATTCTCT 699 |||| ||||||||||||||||| ||||| ||||||||| ||||||||||| | ||||| Sbjct 1447 CAATTGCTATCTGGTCTGTGACCCAAAACTTTGATTGCTGCAAGCACTGGGACAATCTCT 1506 Query 700 T-AAGGAGAATCTAGAAGCTAGTGTTTCTCTTCTTA 734 ||||||||||| |||||||||||| || |||||| Sbjct 1507 ACAAGGAGAATCTGGAAGCTAGTGTTGCTGTTCTTA 1542 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35666244370 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5