BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942730

Length=735
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70770.1 | Symbols:  | Protein of unknown function DUF2359, ...   265    5e-70


> AT1G70770.1 | Symbols:  | Protein of unknown function DUF2359, 
transmembrane | chr1:26688230-26691277 REVERSE LENGTH=2317
Length=2317

 Score =  265 bits (143),  Expect = 5e-70
 Identities = 318/396 (80%), Gaps = 37/396 (9%)
 Strand=Plus/Plus

Query  352   AGGCTCGGACCATACTTGTAAATCGAGCTGTTAGGAAGGGAGAGTGGCGGATTCCACCTT  411
             ||||||| ||||||||||||||| |||||||||||||||||||| |   |||||||||| 
Sbjct  1171  AGGCTCGTACCATACTTGTAAATGGAGCTGTTAGGAAGGGAGAGCGTTTGATTCCACCTC  1230

Query  412   CTTCATTTGAGATCTTGTTGCGGCTTACATTCCCTTCTTCATCCGCTAGAGTAAAGGCAA  471
             ||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||| |
Sbjct  1231  CTTCATTTGAGATCTTGTTGCGGCTTACATTCCCTGCATCATCTGCAAGAGTAAAGGCTA  1290

Query  472   CAAAGAGGTTTGAGG-AAGTTTATCCCTTGTTGAAAGAAGTAGC-C---CT--TGCACCA  524
             || |||||||||||| || | ||||||||| |||||||||| || |   ||  |||||||
Sbjct  1291  CAGAGAGGTTTGAGGCAA-TATATCCCTTGCTGAAAGAAGTGGCTCTTGCTGGTGCACCA  1349

Query  525   AAGAGTGCAA--CAGAAGGGA-AAG-CAGTGGAACAGATATTCACTTTTTC-CTTGAAAT  579
               ||  ||||  | || |  | ||| ||    ||||||||||||||||| | || |||||
Sbjct  1350  G-GAA-GCAAGGC-GATGAAACAAGTCACAC-AACAGATATTCACTTTTGCTCT-GAAAT  1404

Query  580   TAGCTGGAGAAGGTGCTAGTGGTAACAAACGAAACATTGGTCTAGCCAAGGAAGCTGCAG  639
             |||||||||||||    |     ||    |    | | | | |||||||||||||| |||
Sbjct  1405  TAGCTGGAGAAGG----A-----AAT---C----C-T-GTTTTAGCCAAGGAAGCTACAG  1446

Query  640   CAATCGCTATCTGGTCTGTGACAGAAAACGTTGATTGCTTTAAGCACTGGGATATTCTCT  699
             |||| |||||||||||||||||  ||||| |||||||||  ||||||||||| | |||||
Sbjct  1447  CAATTGCTATCTGGTCTGTGACCCAAAACTTTGATTGCTGCAAGCACTGGGACAATCTCT  1506

Query  700   T-AAGGAGAATCTAGAAGCTAGTGTTTCTCTTCTTA  734
               ||||||||||| |||||||||||| || ||||||
Sbjct  1507  ACAAGGAGAATCTGGAAGCTAGTGTTGCTGTTCTTA  1542



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35666244370


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5