BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942732
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14800.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 289 1e-77
AT1G54430.1 | Symbols: | transposable element gene | chr1:2031... 289 1e-77
AT3G30420.1 | Symbols: | transposable element gene | chr3:1205... 172 1e-42
> AT1G14800.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr1:5099572-5102558 FORWARD LENGTH=1155
Length=1155
Score = 289 bits (156), Expect = 1e-77
Identities = 187/202 (93%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 21 ATGGCTGCAA-TTGATGTTGTTCCAATTCCTACCAATGCAAACTATGTTGCTTTTGATGA 79
||||||| || ||||||||||| |||||||| | || ||||||||||| ||||||||||
Sbjct 1 ATGGCTG-AAGTTGATGTTGTTGCAATTCCTTCTAAAGCAAACTATGTAGCTTTTGATGC 59
Query 80 TTTACGACTTGGTCGCTCTACTCAACAGGTTGTTGGTCGGCTACTTCGTTTTTGGGATGC 139
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 TTTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGCCTACTTCGTTTTTGGGATGC 119
Query 140 TCGCAACATCAAGAAAGATGGTCAATTCATGGGGATAGTCCTCCTTTTACTCGATGAAAA 199
||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct 120 TCGCAACATCAAGAAAGATGGCCAATTCATGGGCATAGTCCTCCTGTTACTTGATGAAAA 179
Query 200 ATGCTCAGTAATCCATGCTTTT 221
|||||| |||||||||||||||
Sbjct 180 ATGCTCCGTAATCCATGCTTTT 201
> AT1G54430.1 | Symbols: | transposable element gene | chr1:20313856-20319554
REVERSE LENGTH=4920
Length=4920
Score = 289 bits (156), Expect = 1e-77
Identities = 187/202 (93%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 21 ATGGCTGCAA-TTGATGTTGTTCCAATTCCTACCAATGCAAACTATGTTGCTTTTGATGA 79
||||||| || ||||||||||| |||||||| | || ||||||||||| ||||||||||
Sbjct 1 ATGGCTG-AAGTTGATGTTGTTGCAATTCCTTCTAAAGCAAACTATGTAGCTTTTGATGC 59
Query 80 TTTACGACTTGGTCGCTCTACTCAACAGGTTGTTGGTCGGCTACTTCGTTTTTGGGATGC 139
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 TTTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGCCTACTTCGTTTTTGGGATGC 119
Query 140 TCGCAACATCAAGAAAGATGGTCAATTCATGGGGATAGTCCTCCTTTTACTCGATGAAAA 199
||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct 120 TCGCAACATCAAGAAAGATGGCCAATTCATGGGCATAGTCCTCCTGTTACTTGATGAAAA 179
Query 200 ATGCTCAGTAATCCATGCTTTT 221
|||||| |||||||||||||||
Sbjct 180 ATGCTCCGTAATCCATGCTTTT 201
> AT3G30420.1 | Symbols: | transposable element gene | chr3:12057058-12060589
FORWARD LENGTH=2514
Length=2514
Score = 172 bits (93), Expect = 1e-42
Identities = 107/114 (94%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 108 GTTGTTGGTCGGCTACTTCGTTTTTGGGATGCTCGCAACATCAAGAAAGATGGTCAATTC 167
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 13 GTTGTTGGTCGCCTACTTCGTTTTTGGGATGCTCGCAACATCAAGAAAGATGGCCAATTC 72
Query 168 ATGGGGATAGTCCTCCTTTTACTCGATGAAAAATGCTCAGTAATCCATGCTTTT 221
||||| ||||||||||| ||||| |||||||||||||| | |||||||||||||
Sbjct 73 ATGGGCATAGTCCTCCTGTTACTTGATGAAAAATGCTCCGAAATCCATGCTTTT 126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11159440278
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5