BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942741
Length=2138
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09630.1 | Symbols: | Protein of unknown function (DUF616) ... 2202 0.0
AT1G34550.1 | Symbols: EMB2756 | Protein of unknown function (D... 1260 0.0
> AT4G09630.1 | Symbols: | Protein of unknown function (DUF616)
| chr4:6083713-6088134 FORWARD LENGTH=2615
Length=2615
Score = 2202 bits (1192), Expect = 0.0
Identities = 1300/1351 (96%), Gaps = 12/1351 (1%)
Strand=Plus/Plus
Query 791 TGAAGAATCACACAAAGATAATCATAGGCACAATGAGGATGGTGCTGCTGAAGAATCTCA 850
|||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||
Sbjct 963 TGAAGAATCACACAAAGATAGTCATAGGCACAATGAGGAT-G-G-TGCTGAAGAATCTCA 1019
Query 851 CAAAGAGAATGCATCTGTTTTTCTTCATTCCACGACCAAGCATCAGAAAATTGAAAAGAT 910
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1020 CAAAGAGACTGCATCTGTGTTTCTTCATTCCACGACCAAGCATCAGAAAATTGAAAAGGT 1079
Query 911 TCATGGAGCAACTTCAAAAAGGTCACGTGGGAAGTCTTCTCTTGTTGGTGCGGGTGGTAA 970
||||||||| ||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1080 TCATGGAGCTACTTCAAAAAGGTCACGTGGGAAGTCTTCTCTT-CT--T---AGTGGTAA 1133
Query 971 GTCCGGGAAAACATCACAAACTGATACAAAAAGACGAGCGCGAAGTCACAGATTTTCAGG 1030
||| ||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||
Sbjct 1134 GTCGGGGAAAACATCGCAAACTGATGCAAAAAGAAGAGCTCGAAGTCACAGATTTTCAGG 1193
Query 1031 CGTATCTTGTGAGATGAAGCTGTTGAATTCCAGTCAACAAATAAAAGAGCCTTTGAAAAC 1090
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1194 CGTATCTTGTGAGATGAAGCTGTTGAATTCCAGTCAACAAATACAAGAGCCTTTGAAAAC 1253
Query 1091 TCAAAATTTTGCTGCACCCTCCTTACAATACATAGAGATGGAGGATAAACCTGATGGAGA 1150
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1254 TCAAAATTTTGCTGCACCCTCCTTACAATACATACAGATGGAGGATAAACCTGATGGAGA 1313
Query 1151 AGAACAGTGGGAGCCTAAATTTGCAGGTCACCAGAGTTTACAGGAACGAGAAGACTCTTT 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 AGAACAGTGGGAGCCTAAATTTGCAGGTCACCAGAGTTTACAGGAACGAGAAGACTCTTT 1373
Query 1211 CTTGGTCCAAGAGCAGAAAATCCATTGTGGCTTTGTCAAAGCCCCTGAAGGATTGCCAAG 1270
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1374 CTTGGTTCAAGAGCAGAAAATCCATTGTGGCTTTGTCAAAGCTCCTGAAGGATTGCCAAG 1433
Query 1271 CACTGGATTTGACCTGACAGAAGATGATGCTAACTATATCAGTAGATGTCACATCGCTGT 1330
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1434 CACTGGATTTGACCTGACAGAAGATGATGCTAACTATATCAGTAAATGTCACATTGCTGT 1493
Query 1331 GATATCCTGTATTTTTGGAAATTCTGATCGCTTGAGGCATCCTGCTAATAAAATGGTAAG 1390
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GATATCCTGTATCTTTGGAAACTCTGATCGCTTGAGGCATCCTGCTAATAAAATGGTAAG 1553
Query 1391 TAGTTTGTCAAGAAAAGATGTTTGCTTCGTTGTGTTTGTGGACGAGATTACCATGCAAAC 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 TAGTTTGTCAAGAAAAGATGTTTGCTTCGTTGTGTTTGTGGACGAGATTACCATGCAAAC 1613
Query 1451 ACTTTCTGCCGAAGGCCAAGTACCTGACGGAGCTGGATTCGTTGGTCTGTGGAAATTGGT 1510
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1614 ACTTTCTGCCGAAGGCCAAGTACCCGACGGAGCTGGATTCGTTGGTCTGTGGAAGTTGGT 1673
Query 1511 TGTGGTGAGGAATCTTCCTTACGCAGATATGCGGAGGGTAGGGAAAATACCAAAACTGTT 1570
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1674 TGTGGTGAGGAATCTTCCTTACACAGATATGCGGAGGGTAGGGAAAATACCAAAACTGTT 1733
Query 1571 ACCACACAGACTTTTCCCTTCGGCAAGGTACTCAATCTGGTTAGACAGCAAGTTACGTCT 1630
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1734 ACCACACAGACTTTTCACTTCGGCAAGGTACTCAATCTGGTTGGACAGCAAGTTACGTCT 1793
Query 1631 CCAGTTGGACCCCCTAGTCATACTGGAATACTTTCTGTGGCGTGAAGGGCACGAGTATGC 1690
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1794 CCAGTTGGACCCCCTAGTCATTTTGGAATACTTTCTGTGGCGTGAAGGGCACGAGTATGC 1853
Query 1691 TATCTCCAACCATTACGACCGCCATTGCCTATGGGAAGAGGTTGCACAAAACAAGAAGCT 1750
||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1854 TATCTCCAATCACTATGACCGCCATTGCCTATGGGAAGAAGTTGCACAAAACAAGAAGCT 1913
Query 1751 GAACAAGTACAATCACACTGTCATTGATCAGCAATTTGAGTTTTACCAGGCTGACGGGCT 1810
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1914 GAACAAGTACAATCACACTGTCATTGATCAGCAGTTTGAGTTTTACCAGTCTGACGGGCT 1973
Query 1811 GACGAGATTCAATGCTTCAGATCCCAACAAGCTTCTTCCCAGCAATGTTCCAGAAGGGTC 1870
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1974 GACGAGATTCAATGCTTCAGATCCCCACAAGCTTCTTCCCAGCAATGTTCCAGAAGGGTC 2033
Query 1871 TTTCATTGTACGAGAACATACCCCCATGTCAAACCTATTCTCTTGTCTTTGGTTCAACGA 1930
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2034 TTTCATTGTACGGGAACATACCCCCATGTCAAACCTATTCTCCTGTCTTTGGTTCAACGA 2093
Query 1931 AGTTGAGCGCTTCACTCCCCGAGATCAGCTGAGCTTTGCATACACCTACCAGAAATTAAC 1990
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2094 AGTTGAGCGCTTCACTCCCCGAGATCAGCTAAGCTTTGCATACACTTACCAGAAATTAAC 2153
Query 1991 AAGGATGAATCCTGACACTCCATTTAATCTTCACATGTTCAAGGATTGCGAGAGGAGAAA 2050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 AAGGATGAATCCTGACACTCCATTTAATCTTCACATGTTCAAGGATTGCGAGAGGAGAAA 2213
Query 2051 AATCACCAAATTGTTTCGTCACAGATCAGAAGAGAAGCGAAACCTTATACAAGCAGCAAC 2110
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2214 AATCACCAAATTGTTTCGTCACAGATCAGAGGAGAAGCGAAACCTTATACAAGCAGCAAC 2273
Query 2111 A-CA-A-TAACAGACCACTTTTTGAATGCTG 2138
| || | ||||||||||||||||||||||||
Sbjct 2274 AACACAATAACAGACCACTTTTTGAATGCTG 2304
Score = 1417 bits (767), Expect = 0.0
Identities = 827/856 (97%), Gaps = 3/856 (0%)
Strand=Plus/Plus
Query 1 GCTTCGTCGACAATGCGAGAATGGCTCAGTATAGACAATCAGGAACGGAGAGGTTTTTGG 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 128 GCTTCGTCGACAATGCGAGAATGGCTCAGTATAGACAATCAGGAACAGAGAGGTTTTTGG 187
Query 61 GAGGTCGAAGCGGTTACAATCCTTATGTCAACGGCGGAGCTTCGTCGGATCATGTAGCGA 120
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 188 GAGGTCGAAGCGGTTACAATCCTTATGTCAACGGTGGAGCTTCGTCAGATCACGTAGCGA 247
Query 121 TCGGGATCCGTAACGGCGGTGGTGGTAATTTCGGAGTTGTAAATCAGCACGGGAAAGCTA 180
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 248 TCGGGATCCGTAACGGCGGTGGTAGTAATTTCGGAGTTGTAACTCAGCACGGGAAAGCTA 307
Query 181 GTCGATGGCGGCGATCTACTCGATTAGATAGGAATCGTCgttgcggtgttggctctttgg 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 308 GTCGATGGCGGCGATCTACTCGATTAGATAGGAATCGTCGTTGTGGTGTTGGCTCTTTGG 367
Query 241 tgtttgttctttgtgttgtgctcgttgtttgtgtCTCAGCTTACTATTATTTCTCTGGTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TGTTTGTTCTTTGTGTTGTGCTCGTTGTTTGTGTCTCAGCTTACTATTATTTCTCTGGTT 427
Query 301 ATACTAATTTTGGCAAAGATGATAAAGGGATGGATACATCTGAAGGTGATTTTCTTACGA 360
|||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||
Sbjct 428 ATACTAATTTCGGCAAAGATGATAAAGGAATTGATACAGCTGAAGGTGATTTTCTTACGA 487
Query 361 ATGTGTCAAGAACTGATCCGTTGAAAATACTGAAGTTTGGTCATGGTTCAGTGTTACATG 420
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 488 ATGTGTCAAGAACTGATCCTTTGAAAATACTTAAGTTTGGTCATGGTTCAGTGTTACATG 547
Query 421 GACGAGATTCGAGAGATTGGGATAAGGATGATAGAAGAAGGGATGAAGATTATAATGAGG 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GAAGAGATTCGAGAGATTGGGATAAGGATGATAGAAGAAGGGATGAAGATTATAATGAGG 607
Query 481 ATGATGTAGAGGATAAATCTGTCGTTGAGGAGAGGTCAGTGTCTGAAGTGAAAAAGGATG 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 608 ATGATGTAGAGGATAAATCTGTTGTTGAGGAGAGGTCAGTGTCTGAAGTGAAAAAGGATG 667
Query 541 TATCGCTGCGGAATCCTTTGAAGGGTTCAGATTGGAAGGGGGTTGGTTTTTATAATGAAG 600
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 668 TATCGCTTCGGAATCCTTTGAAGGGTTCGGATTGGAAGGGGGTTGGTTTTTACAATGAAG 727
Query 601 CTGGACGTGATGAGCTGAAGAAATATGAAGTGGAGTATCAGGCTTCTCTTGTAAAAGGTG 660
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 728 CTGGACGTGATGAGCTGAAGAAGTATGAAGTGGAGTATCAGGCTTCTCTTGTAAAAGGTG 787
Query 661 GTCAATCTTTGAAGGAGAATGATGGGCATCATCAGCCATTTGATACTGAATCTAATGAAG 720
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 788 GTCAATCGTTGAAAGAGAATGATGGGCATCATCAGCCATTTGATACAGAATCTAATGAAG 847
Query 721 ATGATTCAATTGATTCTCATGATACTCAAGGGGATGAATATGTTGATATGGGGCATGATG 780
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 848 ATGATTCGATTGATTCTCATGATACTCAAGGGGATGAATATGTTGACATGGGGCATGATG 907
Query 781 GGGATGAAAATGAAGAATCACACAAAGATAATCATAGGCACAATGAGGATGGTGCTGCTG 840
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 908 GGGATGAAAATGAAGAATCACACAAAGATAATCATAAGCACAATGAGGATGGTGCTG--- 964
Query 841 AAGAATCTCACAAAGA 856
||||||| ||||||||
Sbjct 965 AAGAATCACACAAAGA 980
> AT1G34550.1 | Symbols: EMB2756 | Protein of unknown function
(DUF616) | chr1:12646696-12652646 REVERSE LENGTH=2600
Length=2600
Score = 1260 bits (682), Expect = 0.0
Identities = 1032/1202 (86%), Gaps = 20/1202 (2%)
Strand=Plus/Plus
Query 923 TTCAAAAAGGTCACGTGGGAAGTCTTCTCTTGTTGGTGCGGGTGGTAAGTCCGGGAAAAC 982
|||||||| ||||| |||| | |||||||||||| || |||||||||||| ||||||||
Sbjct 1020 TTCAAAAATGTCACTTGGGGATTCTTCTCTTGTTAGTAAGGGTGGTAAGTCTGGGAAAAC 1079
Query 983 ATCACAAACTGATACAAAAAGACGAGCGCGAAGTCACAGATTTTCAGGCGTATCTTGTGA 1042
||||| | ||||||| |||||| || | | ||| ||||| |||| | || || |||||
Sbjct 1080 ATCACGATCTGATACTAAAAGA--AGAG-GTCGTCGCAGATCTTCA-G-GT-TCATGTGA 1133
Query 1043 GATGAAGCTGTTGAATTCCAGTCAACAAATAAAAGAGCCTTTGAAAACTC-AAAATTTTG 1101
|||||||| |||||||| ||||||| |||| ||||| ||||| |||| |||| | ||
Sbjct 1134 AATGAAGCTATTGAATTCTAGTCAACCAATAGTGGAGCCCTTGAATACTCGAAAA-TCTG 1192
Query 1102 CT-GCACCCTCCTTACAATACATAGAGATGGAGGATAAACCTGATGGAGAAGAACAGTGG 1160
|| | | || ||||| |||||||||| ||| ||||| ||||||| |||||||||||||
Sbjct 1193 CTAG-ATTTTCTTTACAGTACATAGAGAAGGAAGATAAGCCTGATGAAGAAGAACAGTGG 1251
Query 1161 GAGCCTAAATTTGCAGGTCACCAGAGTTTACAGGAACGAGAAGACTCTTTCTTGGTC-CA 1219
||||||| |||||||||||| |||||||||||||| |||||||| || ||| ||| | ||
Sbjct 1252 GAGCCTAGATTTGCAGGTCATCAGAGTTTACAGGAGCGAGAAGATTCCTTCGTGG-CTCA 1310
Query 1220 AGAGC-AGAAAATCCATTGTGGCTTTGTCAAA-GCCCCTGAAGGAT-TGCCAAGCACTGG 1276
||| | ||||||| ||||| |||||||||||| | ||| |||||| | ||||||||||
Sbjct 1311 AGA-CAAGAAAATTCATTGCGGCTTTGTCAAAGGTCCC-AAAGGATCT-TCAAGCACTGG 1367
Query 1277 ATTTGACCTGACAGAAGATGATGCTAACTATATCAGTAGATGTCACATCGCTGTGATATC 1336
||||||||||||||||||||| |||| |||||||||||||| ||||||||||| | ||
Sbjct 1368 GTTTGACCTGACAGAAGATGATACTAATTATATCAGTAGATGCCACATCGCTGTTAGCTC 1427
Query 1337 CTGTATTTTTGGAAATTCTGATCGCTTGAGGCATCCTGCTAATAAAATGGTAAGTAGTTT 1396
|| || ||||| ||||||||||| ||||||| |||||| || |||||| ||||| | ||
Sbjct 1428 ATGCATCTTTGGCAATTCTGATCGTTTGAGGCCTCCTGCCAACAAAATGATAAGTCGGTT 1487
Query 1397 GTCAAGAAAAGATGTTTGCTTCGTTGTGTTTGTGGACGAGATTACCATGCAAACACTTTC 1456
||| |||||| |||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1488 GTCGAGAAAAAATGTATGCTTCATTGTGTTCGTGGACGAGATTACCATGCAAACACTTTC 1547
Query 1457 TGCCGAAGGCCAAGTACCTGACGGAGCTGGATTCGTTGGTCTGTGGAAATTGGTTGTGGT 1516
||| ||||| || | || ||| |||| |||||| ||||||||||||| |||||||| ||
Sbjct 1548 TGCAGAAGGACATGCCCCAGACAGAGCAGGATTCATTGGTCTGTGGAAGTTGGTTGTCGT 1607
Query 1517 GAGGAATCTTCCTTACGCAGATATGCGGAGGGTAGGGAAAATACCAAAACTGTTACCACA 1576
|| ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||
Sbjct 1608 GAAGAATCTTCCTTACGCAGATATGCGGAGGGTAGGAAAAATACCAAAAATGTTGCCACA 1667
Query 1577 CAGACTTTTCCCTTCGGCAAGGTACTCAATCTGGTTAGACAGCAAGTTACGTCTCCAGTT 1636
| |||||||||| || |||||||||||||||||||| |||||||||||||| || |||||
Sbjct 1668 CCGACTTTTCCCATCAGCAAGGTACTCAATCTGGTTGGACAGCAAGTTACGACTTCAGTT 1727
Query 1637 GGACCCCCTAGTCATACTGGAATACTTTCTGTGGCGTGAAGGGCACGAGTATGCTATCTC 1696
|||||| ||| |||| ||||| ||||| || |||||| |||| |||||||||||||| ||
Sbjct 1728 GGACCCACTACTCATTCTGGAGTACTTCCTATGGCGTAAAGGTCACGAGTATGCTATATC 1787
Query 1697 CAACCATTACGACCGCCATTGCCTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAA 1756
||| || || ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1788 CAATCACTATGACCGTCATTGTTTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAA 1847
Query 1757 GTACAATCACACTGTCATTGATCAGCAATTTGAGTTTTACCAGGCTGACGGGCTGACGAG 1816
||| || || ||||| ||| |||| || ||| |||||||| ||||||| |||||||| ||
Sbjct 1848 GTATAACCATACTGTTATTAATCAACAGTTTCAGTTTTACAAGGCTGATGGGCTGACCAG 1907
Query 1817 ATTCAATGCTTCAGATCCCAACAAGCTTCTTCCCAGCAATGTTCCAGAAGGGTCTTTCAT 1876
|||||||||||| ||||| |||||||||||| |||||||||||||| |||||||||||
Sbjct 1908 ATTCAATGCTTCGGATCCGTTCAAGCTTCTTCCTAGCAATGTTCCAGAGGGGTCTTTCAT 1967
Query 1877 TGTACGAGAACATACCCCCATGTCAAACCTATTCTCTTGTCTTTGGTTCAACGAAGTTGA 1936
||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||| ||
Sbjct 1968 AGTACGAGCTCATACTCCCATGTCGAACCTATTCTCATGTCTTTGGTTCAATGAAGTGGA 2027
Query 1937 GCGCTTCACTCCCCGAGATCAGCTGAGCTTTGCATACACCTACCAGAAATTAACAAGGAT 1996
|||||||||||||| || |||||||||||||| || || ||||||||| ||| ||||||
Sbjct 2028 ACGCTTCACTCCCCGGGACCAGCTGAGCTTTGCCTATACTTACCAGAAACTAAGAAGGAT 2087
Query 1997 GAATCCTGACACTCCATTTAATCTTCACATGTTCAAGGATTGCGAGAGGAGAAAAATCAC 2056
||||||||| | |||||||||||||||||||||||||| || ||||| |||||||| |
Sbjct 2088 GAATCCTGATAAACCATTTAATCTTCACATGTTCAAGGACTGTGAGAGAAGAAAAATTGC 2147
Query 2057 CAAA-TTGTTTCGTCACAGATCAGAAGAGAAGCGAAACCTTATACAAGCAGCAACACAAT 2115
||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 2148 -AAAGTTGTTCCGTCACAGATCAGACGAGAAGCGAAACCTTATACAAGCAGCAATACAAT 2206
Query 2116 AA 2117
||
Sbjct 2207 AA 2208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106023551040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5