BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942753
Length=1907
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136249-6139711 FORWA... 3003 0.0
> AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136249-6139711 FORWARD
LENGTH=2151
Length=2151
Score = 3003 bits (1626), Expect = 0.0
Identities = 1812/1902 (95%), Gaps = 11/1902 (1%)
Strand=Plus/Plus
Query 1 GTAACAAGAACACGCGCGAAAGCTATGGTAGGAGCTTCAAGAACAATCCTATCCCTATCT 60
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTAAGAAAAACACGCGCGAAAGCTATGGTAGGAGCTTCAAGAACAATCCTATCCCTATCT 120
Query 61 CTATCATCTTCCCTCTTCACTTTCTCCAAAATCCCTCACGTTTTCCCATTTCTCCGCCTC 120
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CTATCATCTTCCCTCTTCACCTTCTCCAAAATCCCTCACGTTTTTCCATTTCTCCGCCTC 180
Query 121 CACAAACCTAGATTCCGCCACGCTTTTCGTCCTCTTTACTCCGCCGCCGCAACAA---CT 177
|||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||
Sbjct 181 CACAAACCCAGATTCCACCACGCGTTTCGTCCTCTTTACTCCGCCGCCGCAACAACTTCT 240
Query 178 TCTCCGACGACGGAGACGAATGTGACAGATCCGGATCAATTGAAACACACGATTTTGCTT 237
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||
Sbjct 241 TCTCCGACGACGGAGACTAATGTTACAGATCCGGATCAATTGAAACATACGATCTTACTA 300
Query 238 GAGAGGCTTAGGCTTAGACATTTGAAGGAATCAGCGAAACCACCGCAACAGAGACCGAGT 297
||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 301 GAGAGGCTTAGGCTTCGACATTTGAAAGAATCAGCGAAACCACCACAACAGAGACC-A-- 357
Query 298 AGTAGTGTTGTTGGTGTAGAGGAAGAGAATAGTATTAGGAAGAAGAGTAAGAAGTTAGTT 357
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 AGTAGTGTTGTTGGTGTAGAGGAAGAGAGTAGTATTAGGAAGAAGAGTAAGAAGTTAGTT 417
Query 358 GAGAATTTTCAGGAGCTTGGG-TTAAGTGAGGAAGTTATGGGAGCTTTACAAGAGTTGAA 416
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 418 GAGAATTTTCAGGA-ATTGGGTTTAAGTGAAGAAGTTATGGGAGCTTTACAAGAGTTGAA 476
Query 417 TATTGAGGTTCCTACGGAGATTCAGTGTATCGGAATACCCGCGGTTATGGAACGGAAGAG 476
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 477 TATTGAGGTTCCTACTGAGATTCAGTGTATCGGAATACCTGCGGTTATGGAACGTAAGAG 536
Query 477 CGTTGTTTTGGGTTCGCATACTGGTTCTGGGAAGACTCTTGCTTACTTGTTGCCTATTGT 536
|||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 537 CGTTGTATTGGGTTCGCATACCGGTTCTGGCAAGACTCTTGCTTACTTGTTGCCTATTGT 596
Query 537 TCAGCTGATGAGAGAAGATGAGGCAAACCTTGGTaaaaaaaCTAAGCCTAGGCGTCCGAG 596
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||
Sbjct 597 TCAGCTGATGAGAGAAGATGAAGCAAACCTTGGTAAAAAAACAAAGCCTAGACGTCCCAG 656
Query 597 GACTGTTGTTCTTTGTCCTACAAGAGAATTATCTGAGCAGGTTTACCGTGTGGCGAAGTC 656
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 GACTGTTGTTCTTTGTCCTACAAGAGAACTATCTGAGCAGGTTTACCGTGTGGCGAAGTC 716
Query 657 CATAAGCCATCACGCGAGGTTTAGATCGATATTGGTTAGTGGTGGTTCTCGGATAAGACC 716
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 717 CATAAGTCATCACGCGAGGTTTAGATCTATATTGGTTAGTGGTGGTTCTCGGATAAGACC 776
Query 717 ACAGGAAGATTCTTTGAACAATGCAATAGACATGGTTGTTGGAACCCCTGGTAGGATTCT 776
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 777 CCAGGAGGATTCTTTGAACAATGCAATAGATATGGTTGTTGGAACCCCTGGTAGGATTCT 836
Query 777 TCAGCATATCGAAGAAGGAAACATGGTCTATGGAGATATCGCATATTTGGTGCTGGATGA 836
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 837 TCAGCATATCGAAGAAGGAAACATGGTGTATGGAGATATCGCATATTTGGTATTGGATGA 896
Query 837 GGCAGACACTATGTTTGATCGAGGCTTTGGTCCCGAGATTCGTAAATTCCTTGCCCCACT 896
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 897 GGCAGATACTATGTTTGATCGTGGCTTTGGTCCCGAAATTCGTAAATTCCTTGCCCCACT 956
Query 897 GAATCAGCGTGCCTTAAAAACCAATGACCAAGGATTTCAAACTGTCTTAGTGACTGCTAC 956
|||||| ||||| || ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 957 GAATCAACGTGCGTTGAAAACAAATGACCAAGGATTTCAAACCGTCTTAGTGACTGCTAC 1016
Query 957 TATGACAACGGCTGTTCAGAAGTTAGTCGATGAGGAGTTTCAAGGGATAGAACATTTGCG 1016
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1017 TATGACAATGGCTGTTCAGAAGTTAGTCGATGAGGAGTTTCAAGGGATAGAGCATTTGCG 1076
Query 1017 AACATCAACATTGCATAAAAAGATAGCAAACGCTCGCCATGACTTCATCAAGCTTTCAGG 1076
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TACATCAACACTGCATAAAAAGATAGCAAACGCTCGCCATGACTTCATCAAGCTTTCAGG 1136
Query 1077 TGGTGAAGATAAGCTAGAAGCACTTCTACAGGTTCTCGAACCCAGCTTAGCCAAAGGGAG 1136
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 1137 TGGTGAAGATAAGCTAGAAGCACTTCTACAGGTTCTTGAACCTAGCCTAGCCAAAGGGAG 1196
Query 1137 CAAGGTGATGGTCTTCTGTAACACTTTGAACTCCAGTCGTGCCGTTGATCACTTTCTTTC 1196
||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 1197 CAAGGTGATGGTCTTCTGTAACACTTTGAACTCCAGTCGCGCTGTTGATCACTATCTTTC 1256
Query 1197 TGAAAACCAGATCTCCACTGTAAATTATCACGGTGAAGTTCCAGCAGACCAAAGGGTTGA 1256
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1257 TGAAAACCAGATCTCCACTGTAAATTATCACGGTGAAGTTCCAGCAGAACAAAGGGTTGA 1316
Query 1257 GAATTTGAAAAAGTTCAAGGACGAAGAAGGAGACTGTCCCACGCTAGTGTGCACGGATTT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GAATTTGAAAAAGTTCAAGGACGAAGAAGGAGACTGTCCCACGCTAGTGTGCACGGATTT 1376
Query 1317 GGCTGCGAGGGGTCTGGACCTCGACGTTGATCATGTAGTCATGTTTGATTTCCCAAAGAA 1376
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GGCTGCAAGGGGTCTGGACCTCGACGTTGATCATGTAGTCATGTTTGATTTCCCAAAGAA 1436
Query 1377 CTCTATTGACTACCTTCATCGCACTGGAAGAACAGCTCGGATGGGTGCTAAAGGAAAAGT 1436
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CTCGATTGACTACCTTCATCGCACTGGAAGAACAGCTCGGATGGGTGCTAAAGGAAAAGT 1496
Query 1437 GACAAGTCTAGTGAGCAGGAAGGACCAAATGTTAGCAGCACGAATCGAAGAAGCAATGAG 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 GACAAGTCTAGTGAGCAGGAAGGACCAAATGTTAGCAGCACGAATCGAAGAAGCAATGAG 1556
Query 1497 AAACAACGAGAGCTTAGAATCACTCACCACTGATAATGTGAGGAGAGACGCTGCAAGAAG 1556
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1557 AAACAACGAGAGCTTAGAATCACTCACGACTGATAATGTGAGGAGAGACGCCGCAAGAAC 1616
Query 1557 CCAAATCACTCAAGAGAAAGGAAGAAGCGTTAAGCAGATGAGAGAAGTAAGCAAGCAACG 1616
||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1617 CCATATCACTCAAGAGAAAGGAAGAAGCGTTAAGCAGATCAGAGAAGTGAGCAAGCAACG 1676
Query 1617 AATCTCCAGAGACAAACCGTCGTCATC-TC-C-TCCTGCAAGATTAACAGGTGGGAAGAC 1673
|| ||||||||||||||| || ||||| || | ||||||||||| ||||||||||||||
Sbjct 1677 AAACTCCAGAGACAAACCATCATCATCATCTCCTCCTGCAAGATCGACAGGTGGGAAGAC 1736
Query 1674 ACCCGTGAGAAAGTCAAGTTCAAGTTCGTTTTCAAAACCCAGAAAAGCATCATCTCCTCC 1733
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1737 ACCCGTGAGAAAGTCAAGTTCAAGTTCGTTTTCGAAACCAAGAAAAGCATCATCTCCTCC 1796
Query 1734 TGAGAAATCTTCAAAGCCGAAAAGAAAAATATTAAAAACGGTTGGATCCAGATCGATTGC 1793
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 AGAGAAATCTTCAAAGCCAAAAAGAAAAATATTAAAAACGGTTGGATCCAGATCGATTGC 1856
Query 1794 TGCGAGGGGGAAGACGGGTTCAGATAGACGACCAGGAAAGAAACTAAGTGTTGTTGGGTT 1853
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1857 TGCGAGGGGGAAGACGGGTTCAGATAGAAGACCAGGAAAGAAACTAAGTGTTGTTGGTTT 1916
Query 1854 CAGGGGAAAGTCTTCTTCGGCAAGAGCCTTTTGATTTACATT 1895
| |||| |||||||||||||||||||||| ||||||||||||
Sbjct 1917 CCGGGGCAAGTCTTCTTCGGCAAGAGCCTCTTGATTTACATT 1958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94427225145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5