BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942756
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09750.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1611 0.0
> AT4G09750.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr4:6146690-6148814 FORWARD LENGTH=1165
Length=1165
Score = 1611 bits (872), Expect = 0.0
Identities = 968/1015 (95%), Gaps = 4/1015 (0%)
Strand=Plus/Plus
Query 1 TATCTTCCACAACTCACGAAAATGTTTCTCTTAAAGACATGGAGATCAACCGCTTTTGGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TATCTTCCACAACTCACGAAAATGTTTCTCTTAAAGACATGGAGATCAACCGCTTTTGGG 119
Query 61 GTTTATGGCTATATGAATTTCACCAAGAATGGTTTCTTAGACCATTCAAAGAAGTTTAAA 120
||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 120 GTTTATGGCTACATGAATTTCACCAAGAGTGGTTTCTTAGATCATTCAAAGAAGTTTAAA 179
Query 121 CCTGAAGATATGCAGTTACAAATAGAAGGAAAGAATTGTGTGGTTACTGGAGCTAATTCT 180
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 180 CCTGAAGATATGCAGTTACAAATTGAAGGAAAGAATTGTGTAGTTACTGGAGCTAATTCA 239
Query 181 GGTATTGGTTATGCTGCTGCAGAGGGTCTAGCTTCACGTGGGGCGACTGTTTACATGGTG 240
|||||||||| |||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 240 GGTATTGGTTTTGCTGCTGCAGAGGGTCTTGCTTCACGTGGAGCAACTGTTTACATGGTG 299
Query 241 TGCCGGAACAAGGAAAGAGGACAAGTGGCTCTTTCTAAGATTCAAACATCAACAGGAAAC 300
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 300 TGCCGGAACAAGGAAAGAGGACAAGAGGCTCTTTCTAAGATTCAAACCTCAACAGGAAAC 359
Query 301 CAAAATGTGTACCTAGAAGTTTGTGATTTGTCTTCCGTTAATGAAAT-AAAGTCCTTTGC 359
|||||||||||| | ||||| |||||||||||||||||||||||||| ||| || |||||
Sbjct 360 CAAAATGTGTACTTGGAAGTATGTGATTTGTCTTCCGTTAATGAAATCAAA-TCATTTGC 418
Query 360 TTCAAGTTTCGCTTCCAAGGATGTTCCGGTTCATGTGCTGGTTAATAATGCTGGTTTGCT 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTCGAGTTTCGCTTCCAAGGATGTTCCGGTTCATGTGCTGGTTAATAATGCTGGTTTGCT 478
Query 420 TGAGAACAAACGTACTATTACACCTGAAGGATTCGAGTTAAATTTCGCGGTGAATGTACT 479
||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 479 TGAGAACAAACGTACTACTACACCTGAAGGATTCGAGTTAAGTTTTGCGGTGAATGTACT 538
Query 480 TGGGACATACACAATGACAGAGTTGATGCTTCCATTGTTGGAGAAAGCAACACCAGACGC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGGGACATACACAATGACAGAGTTGATGCTTCCATTGTTGGAGAAAGCAACACCAGACGC 598
Query 540 CAAAGTCATTACAGTTGCCTCTGGTGGAATGTACACATCGCCGCTTACAACAGATCTTCA 599
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 599 CAAAGTCATTACAGTTGCCTCTGGTGGAATGTACACTTCGCCGCTTACTACAGATCTTCA 658
Query 600 GTTTAGTGGTGAAAAGTTCGATGGAGTGGAACAATACGCACGGAACAAAAGAATTCAGGT 659
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 659 GTTTAGTGGTGAAAAATTTGATGGAGTGGAACAATACGCACGGAACAAAAGAATCCAGGT 718
Query 660 TGCTCTAACAGAAAAGTGGGCTGATAAGTACAAAGAA-AAAGGCATAGGGTTCTACTCAA 718
||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||
Sbjct 719 GGCTCTGACAGAAAAATGGGCTGATAAGTACAAA-AATAAAGGCATAGGGTTCTACTCAA 777
Query 719 TGCATCCTGGCTGGGCTGAGACACCTGGTGTTGCCAAGAGTTTACCGAGTTTCAGTGAAT 778
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 778 TGCACCCTGGCTGGGCTGAGACACCAGGTGTTGCCAAGAGTTTACCGAGTTTCAGTGAAT 837
Query 779 CGTTTGCGGGTAAGCTTAGAACAAGCGAACAAGGAGCAGATACAATCGTTTGGTTAGCAC 838
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 838 CGTTCGCGGGTAAGCTTAGAACAAGCGAACAAGGAGCCGATACAATCGTTTGGTTAGCAC 897
Query 839 TGCAGCCTAAAGAGAAGCTGGTCTCTGGTTCATTCTATTTCGATAGAGCTGAAGCACCAA 898
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 898 TGCAGCCAAAAGAGAAGCTTGTCTCTGGTGCATTCTATTTCGATAGAGCTGAAGCACCAA 957
Query 899 AACATCTAAAGCTTGCAGGTACAAGCAAGTCCCATGACCTTATAGACTCAGTCATTGATA 958
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 958 AACATCTAAAGCTTGCAGGTACAAGCAAGTCTCATGACCTTATTGACTCAGTCATTGATT 1017
Query 959 CTGTGCATTCCATGGCAGCTCTTGATCCTTAAGTGTCCATCTTCGTCGTAATTTT 1013
||||||||||||||||||||||| |||||||| |||||||||||| | || ||||
Sbjct 1018 CTGTGCATTCCATGGCAGCTCTTAATCCTTAAATGTCCATCTTCGACATAGTTTT 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49631337236
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5