BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942768

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G09840.1 | Symbols:  | unknown protein; Has 25 Blast hits to...   381    3e-105


> AT4G09840.1 | Symbols:  | unknown protein; Has 25 Blast hits 
to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 4; Fungi - 4; Plants - 9; Viruses - 3; Other Eukaryotes 
- 5 (source: NCBI BLink). | chr4:6190788-6191664 REVERSE LENGTH=693
Length=693

 Score =  381 bits (206),  Expect = 3e-105
 Identities = 350/414 (85%), Gaps = 31/414 (7%)
 Strand=Plus/Plus

Query  40   AGTTTGTGAGGGTATCATGTCGGCTATCGGTTTCCCGACTGAACCATCTGATCCGTCTCA  99
            |||||||||| ||||||| | |||||||||||  |||||||||||||||||||  |||||
Sbjct  150  AGTTTGTGAGAGTATCATCTGGGCTATCGGTTAACCGACTGAACCATCTGATCAATCTCA  209

Query  100  TCAATGCATGGTCGACGAACAGTATCAATTACGA-TGATGGTGTGATTGTGGAGGCTGTA  158
            ||||||| ||||| |||||| || |  | ||||| |||||||||||||||||||||||||
Sbjct  210  TCAATGCGTGGTCAACGAACTGTCTTGAGTACGATTGATGGTGTGATTGTGGAGGCTGTA  269

Query  159  TACAAATGGGTTCCGGGTTCCCTTGGACTTGAATTGGTTGCGGAGGGAGGTGAGGGTGGC  218
            |||||||||||||| ||||| ||||||||||||||||||| |  |   ||  ||| ||||
Sbjct  270  TACAAATGGGTTCCTGGTTCTCTTGGACTTGAATTGGTTG-GT-GTT-GG--AGG-TGGC  323

Query  219  GGCTTTGGCGGAAATAATCAACAAGGCCTTGGTGGGAATGATCAGCAAGCCGTCCCAGCT  278
            | | |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct  324  GACGTTGGCGGAAATAATCAACAAGGCCTTCGTGGGAATGATCAGCAAGCCGTCCCATCT  383

Query  279  GCAGTCGCTGGAGTTTCGGATAGTGAAGGAGATGAAGCCGCCTTAGATGAAGATCGTGAA  338
            || ||||||||||||||||||||||||| ||||||||       | |  |   | |  ||
Sbjct  384  GCCGTCGCTGGAGTTTCGGATAGTGAAGAAGATGAAG-------A-AC-A---T-G--AA  428

Query  339  GCTGGAGATGACCAACagagcaagagaaagcgaaagagagaagagaaggagaagaagaag  398
            |||||||||||||||||||| | ||||||||||||||||||| | |||||||| |||  |
Sbjct  429  GCTGGAGATGACCAACAGAGTAGGAGAAAGCGAAAGAGAGAACAAAAGGAGAACAAG--G  486

Query  399  ggtcaggaggaagagaaggagaag-a-a-ga---ttcagaaAATCTGATAACTC  446
            | |||||||||||||||||||||| | | ||   ||||||||| ||||| ||||
Sbjct  487  G-TCAGGAGGAAGAGAAGGAGAAGGAGATGAAGATTCAGAAAACCTGATCACTC  539



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21916738564


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5