BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942771

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38780.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   390    5e-108


> AT2G38780.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; 
EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 
58 proteins in 23 species: Archae - 0; Bacteria - 4; Metazoa 
- 1; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes 
- 9 (source: NCBI BLink). | chr2:16210857-16214232 FORWARD 
LENGTH=1527
Length=1527

 Score =  390 bits (211),  Expect = 5e-108
 Identities = 243/259 (94%), Gaps = 0/259 (0%)
 Strand=Plus/Plus

Query  136  TCTCTAGCATTGATTTCATTGGGCTTGGCTTTGCTGATAAGAAGAGCACAAGGGGACTTC  195
            |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct  525  TCTCCAGCATTGATTTCATGGGGCTTGGCTTTGCTGATAAGAAGAGCACGAGGGGGCTTC  584

Query  196  CAGCGGGACTTGTTCCTGTTGTTGACTATCTTCCTCAAGGAGACCTACCTGAGGTGGAGC  255
            ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| 
Sbjct  585  CAGCGGGACTTGTTCCTGTTGTTGACTATCTTCCTGAAGGAGACTTACCTGAGGTGGAGT  644

Query  256  TTATTGTTGGTGATCAAACAAGATTTGCTAAGAAAGAAAAGGAGGTGGAGCAAGAAGGAG  315
            |||||||||||||| |||||||||||||  |||||| ||||||||| |||||||||||||
Sbjct  645  TTATTGTTGGTGATAAAACAAGATTTGCGGAGAAAGTAAAGGAGGTTGAGCAAGAAGGAG  704

Query  316  ATGGTAACTCTCATGTATATAAGCCCAAAGTTTCTACATGGGGAGTTTTCCCAAGACCTA  375
            |||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct  705  ATGGAAACTCTGATGTGTATAAACCCAAAGTTTCTACATGGGGAGTTTTCCCAAGACCTA  764

Query  376  GCAACATCTCTAAGACGTT  394
            |||||||||||||||||||
Sbjct  765  GCAACATCTCTAAGACGTT  783


 Score =  137 bits (74),  Expect = 7e-32
 Identities = 88/95 (93%), Gaps = 0/95 (0%)
 Strand=Plus/Plus

Query  1    GCAAAAAGAAGGAGAGAAAAATGCAGGCGACGGGGAATTGCCGCTCTCGGTTAAAGCTGC  60
            ||||||| ||  |||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct  316  GCAAAAAAAACCAGAGAAAAATGCCGGCGACGAGGAATTGCCGCTCTCTGTTAAGGCTGC  375

Query  61   TATGCAAAAAGCCAATGATTATAAGAAAAGGAAAG  95
            |||||||||||||||||||||||||||||||||||
Sbjct  376  TATGCAAAAAGCCAATGATTATAAGAAAAGGAAAG  410



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20559509341


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5