BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942773

Length=220
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18000.2 | Symbols: TAF14 | TBP-associated factor 14 | chr2:...   237    3e-62


> AT2G18000.2 | Symbols: TAF14 | TBP-associated factor 14 | chr2:7829035-7830580 
FORWARD LENGTH=807
Length=807

 Score =  237 bits (128),  Expect = 3e-62
 Identities = 161/177 (91%), Gaps = 2/177 (1%)
 Strand=Plus/Plus

Query  21   ATGGAGTCTGATATCGAGATTCTGCCAGATGCTGATGCGTCTACGCAGAAGATACGCATG  80
            |||||||| |||||||||||| || | || ||||||||||||| || |||| ||||||| 
Sbjct  1    ATGGAGTCGGATATCGAGATTTTGTCTGAAGCTGATGCGTCTATGCGGAAGCTACGCAT-  59

Query  81   TTT-GGAATTGATGATCGCGAAGATAAGAATGGGAGAAGAAGGATCAAAGATGTTGAAGT  139
            ||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct  60   TTTCGGAATTGATGATCGCGAAGATGAGAATGGGAGAAGAAGAATCAAAGATGTTGAAGT  119

Query  140  TTATGTTCCTATTGTGTATGGATCGATTGCTTTTTATCTTGGAAAGAAAGGTACAGA  196
            ||||||||| ||||||| ||||||||||||||||||||||||||||||||  |||||
Sbjct  120  TTATGTTCCGATTGTGTGTGGATCGATTGCTTTTTATCTTGGAAAGAAAGCCACAGA  176



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9852478804


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5