BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942774

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64030.1 | Symbols: ATSRP3, SRP3 | serpin 3 | chr1:23752873-...   490    6e-138
  AT1G65385.1 | Symbols:  | pseudogene, putative serpin, blastp m...   438    2e-122


> AT1G64030.1 | Symbols: ATSRP3, SRP3 | serpin 3 | chr1:23752873-23754348 
REVERSE LENGTH=1158
Length=1158

 Score =  490 bits (265),  Expect = 6e-138
 Identities = 352/395 (89%), Gaps = 2/395 (1%)
 Strand=Plus/Plus

Query  23   ATGGATGTAAGAGAAGCTATCAAGAAGCAAACCGACGTCGCCATGATCCTCTT-CGGGCA  81
            |||||||||||||||||||| ||||| |||||| |||| ||||||||||| || ||||||
Sbjct  1    ATGGATGTAAGAGAAGCTATGAAGAACCAAACCCACGTTGCCATGATCCT-TTCCGGGCA  59

Query  82   CGTCTTATCATCCACGCCAAAAGACTCTAACATCATCTTCTCACCGGCGTCAATAAACTC  141
            ||||||||| ||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct  60   CGTCTTATCTTCCGCGCCCAAAGACTCTAACGTCATCTTCTCACCGGCGTCAATAAACTC  119

Query  142  TGCAATCACCATGCTTGCAGCTGGTCCCGGAGGTGATGTAGTCGCCGGTAAAATCCTCTC  201
            ||| ||||| ||||  || |||||||||||||||||| ||||| ||||  ||||||||||
Sbjct  120  TGCGATCACGATGCACGCCGCTGGTCCCGGAGGTGATTTAGTCTCCGGCCAAATCCTCTC  179

Query  202  CTTCCTCAGATCTTCTTCAATTGATGAGCTCAAAGCCATCTTCCGAGAACTATCGTCCGT  261
            |||||| ||||| ||||||||||||||||||||| || | |||||||||||| | |||||
Sbjct  180  CTTCCTAAGATCATCTTCAATTGATGAGCTCAAAACCGTGTTCCGAGAACTAGCCTCCGT  239

Query  262  CGTCTACGCCGACAGCAGCGCGAGTGGTGGACCAAAGATAAAGGCAGTGAATGGCCTCTG  321
            |||||| |||||||| ||||| |  || || |||||||||| ||| | ||||||||| ||
Sbjct  240  CGTCTATGCCGACAGAAGCGCCACCGGCGGCCCAAAGATAACGGCGGCGAATGGCCTTTG  299

Query  322  GATTGAGAAATCACTTCCGACTGATCCTAAGTTCAAGGATCTCTTTGAGAACTTCTTTAA  381
            |||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct  300  GATTGATAAATCACTTCCGACTGATCCCAAGTTCAAGGACCTCTTCGAGAACTTCTTTAA  359

Query  382  GGCTGTTTATGTTCCTGTAGATTTCCGATCAAAGG  416
            ||||||||||||||| ||||||||||||||| |||
Sbjct  360  GGCTGTTTATGTTCCAGTAGATTTCCGATCAGAGG  394


> AT1G65385.1 | Symbols:  | pseudogene, putative serpin, blastp 
match of 51% identity and 9.6e-61 P-value to GP|26224736|gb|AAN76362.1||AY158152 
serpin-like protein {Citrus x paradisi} 
| chr1:24289658-24291024 REVERSE LENGTH=1367
Length=1367

 Score =  438 bits (237),  Expect = 2e-122
 Identities = 345/396 (87%), Gaps = 11/396 (3%)
 Strand=Plus/Plus

Query  38   GCTATCAAGAAGCAAACCGACGTCGCCATGATCCTCTTCG-GGCACGTCTTATCATC-CA  95
            ||||| |||||||||| ||||||||| |||||||| |  | ||||||||||||| ||  |
Sbjct  16   GCTATGAAGAAGCAAAACGACGTCGCGATGATCCT-TGGGAGGCACGTCTTATCTTCTGA  74

Query  96   CGCCAAAAGACTCTAACATCATCTTCTCACCGGCGTCAATAAACTCTGCAATCACCATGC  155
             | |    || |||||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct  75   -GTC---GGAATCTAACGTCATCTTCTCGCCGGCGTCAATAAACTCTGCGATCACCATGC  130

Query  156  TTGCAGCTGGTCCCGGAGGT-GATGTAGTCGCCGGTAAAATCCTCTCCTTCCTCAGATCT  214
              || |||||| |||||||| | | ||||||||||| |||||||||||||||||||||||
Sbjct  131  ACGCCGCTGGTTCCGGAGGTGGCT-TAGTCGCCGGTGAAATCCTCTCCTTCCTCAGATCT  189

Query  215  TCTTCAATTGATGAGCTCAAAGCCATCTTCCGAGAACTATCGTCCGTCGTCTACGCCGAC  274
            |||||||| |||||||||||| || |||||||||||||||| ||| ||||||||||||||
Sbjct  190  TCTTCAATCGATGAGCTCAAATCCGTCTTCCGAGAACTATCATCCATCGTCTACGCCGAC  249

Query  275  AGCAGCGCGAGTGGTGGACCAAAGATAAAGGCAGTGAATGGCCTCTGGATTGAGAAATCA  334
            |||||||| ||||| || |||||||| | ||| |||||||||||||||||||||||||||
Sbjct  250  AGCAGCGCTAGTGGCGGCCCAAAGATGAGGGCGGTGAATGGCCTCTGGATTGAGAAATCA  309

Query  335  CTTCCGACTGATCCTAAGTTCAAGGATCTCTTTGAGAACTTCTTTAAGGCTGTTTATGTT  394
            || |||| |||||| || | ||||| |||||| ||||||||||| ||||||||||| |||
Sbjct  310  CTACCGATTGATCCCAAATACAAGGCTCTCTTCGAGAACTTCTTCAAGGCTGTTTACGTT  369

Query  395  CCTGTAGATTTCCGATCAAAGGTAAATTTTC-ACTT  429
            || |||||||||||||||||||||| ||||| ||||
Sbjct  370  CCCGTAGATTTCCGATCAAAGGTAA-TTTTCCACTT  404



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5