BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942778
Length=531
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44160.1 | Symbols: MTHFR2 | methylenetetrahydrofolate reduc... 761 0.0
AT3G59970.3 | Symbols: MTHFR1 | methylenetetrahydrofolate reduc... 407 6e-113
> AT2G44160.1 | Symbols: MTHFR2 | methylenetetrahydrofolate reductase
2 | chr2:18262210-18265346 FORWARD LENGTH=2037
Length=2037
Score = 761 bits (412), Expect = 0.0
Identities = 445/461 (97%), Gaps = 2/461 (0%)
Strand=Plus/Plus
Query 72 GCCTTGGAAACCTTAAAAGCAGTCCCTGGTCTGAATTAGATGGACTCCAGCCAGAGACAA 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 GCCTTGGAAACCTTAAAAGCAGTCCCTGGTCTGAATTAGATGGACTCCAGCCAGAGACAA 1355
Query 132 AGATAATAAACGAGCAACTGGTAAAAATCAACTCCAAAGGCTTCTTGACCATCAACAGCC 191
||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 1356 GGATAATAAACGAGCAACTGATAAAAGTCAACTCCAAAGGCTTCTTGACCATCAATAGCC 1415
Query 192 AACCATCAGTCAACGCCGAGAGATCTGATTCCCTAACTGTTGGGTGGGGAGGTCCTGTTG 251
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1416 AACCATCAGTCAACGCCGAGAGATCTGATTCCCCAACTGTTGGATGGGGAGGTCCTGTTG 1475
Query 252 GATATGTATACCAAAAGGCTTATCTAGAGTTCTTCTGCTCAAAGGAGAAATTAGATGCAG 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 GATATGTATACCAAAAGGCTTATCTAGAGTTCTTCTGCTCAAAGGAGAAATTAGATGCAG 1535
Query 312 TGGTGGAGAAATGCAAAGCTTTGCCATCGATTACTTACATGGCTGTGAACAAAGGAGAAA 371
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 TGGTGGAGAAATGCAAAGCTTTGCCATCGATTACTTACATGGCTGTGAACAAAGGAGAAC 1595
Query 372 ACTGGGTATCGAACACTGCCCAATCTGATGTGAATGCTGTTACATGGGGAGTTTTCCCGG 431
| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 1596 AGTGGGTATCGAACACTGCCCAAGCTGATGTGAATGCTGTAACTTGGGGAGTTTTCCCGG 1655
Query 432 CTAAGGAAATCATTCAACCAACCATTGTCGATCCCGCTAGCTTCAAAGTCTGGAAGGATG 491
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1656 CTAAGGAAATCATTCAACCAACCATTGTCGATCCCGCTAGCTTCAACGTCTGGAAGGATG 1715
Query 492 AAGCATTT-AGGACTTGGTGAAGATGCTGGGCTAACTTGTA 531
|||||||| || ||||||| |||| ||||||||||||||||
Sbjct 1716 AAGCATTTGAG-ACTTGGTCAAGAAGCTGGGCTAACTTGTA 1755
> AT3G59970.3 | Symbols: MTHFR1 | methylenetetrahydrofolate reductase
1 | chr3:22151195-22154483 FORWARD LENGTH=2047
Length=2047
Score = 407 bits (220), Expect = 6e-113
Identities = 384/463 (83%), Gaps = 12/463 (3%)
Strand=Plus/Plus
Query 75 TTGGAAACCTT-AAAAGCAGTCCC-TGGTCTGAATTAGATGGACTCCAGCCAGAGACAAA 132
||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1316 TTGGAAA-CTTAAAAAGCAG-CCCATGGTCTGAATTAGATGGACTCCAGCCAGAGACAAA 1373
Query 133 GATAATAAACGAGCAACT-GGTAAAAATCAACTCCAAAGGCTTCTTGACCATCAACAGCC 191
||| ||||| |||||||| || ||||||||||||||| || ||| ||||||| || ||||
Sbjct 1374 GATCATAAATGAGCAACTCGG-AAAAATCAACTCCAACGGTTTCCTGACCATTAATAGCC 1432
Query 192 AACCATCAGTCAACGCCGAGAGATCTGATTC-CCTAACTGTTGGGTGGGGAGGTCCTGTT 250
||||||||||||| || | | ||| ||||| || | || |||| ||||| ||||||| |
Sbjct 1433 AACCATCAGTCAATGCAGCCAAATCCGATTCTCC-AGCTATTGGATGGGGTGGTCCTGGT 1491
Query 251 GGATATGTATACCA-AAAGGCTTATCTAGAGTTCTTCTGCTCAAAGGAGAAATTAGATGC 309
|| || || ||||| |||| ||||||| ||||||||||| |||||||| || ||||| |
Sbjct 1492 GGTTACGTCTACCAGAAAG-CTTATCTGGAGTTCTTCTGTTCAAAGGATAAGTTAGACAC 1550
Query 310 AGTGGTGGAGAAATGCAAAGCTTTGCCATCGATTACTTACATGGCTGTGAACAAAGGAGA 369
| | |||||||||| ||||||||| || || || || |||||||| ||||||||| |||
Sbjct 1551 ACTTGTGGAGAAATCCAAAGCTTTTCCTTCTATCACCTACATGGCCGTGAACAAATCAGA 1610
Query 370 AAACTGGGTATCGAACACTGCCCAATCTGATGTGAATGCTGTTACATGGGGAGTTTTCCC 429
|| |||||||| ||||| | | || ||||||||||| ||||| |||||||| |||||
Sbjct 1611 GAATTGGGTATCAAACACCGGTGAGTCCGATGTGAATGCAGTTACTTGGGGAGTGTTCCC 1670
Query 430 GGCTAAGGAAATCATTCAACCAACCATTGTCGATCCCGCTAGCTTCAAAGTCTGGAAGGA 489
|||||||| | |||||||| || || || ||||| || || |||||||||||||| ||
Sbjct 1671 AGCTAAGGAGGTTATTCAACCGACGATCGTGGATCCAGCCAGTTTCAAAGTCTGGAAAGA 1730
Query 490 TGAAGCATTT-AGGACTTGGTGAAGATGCTGGGCTAACTTGTA 531
||||| ||| || | ||||| |||| ||||||||||||||||
Sbjct 1731 CGAAGCGTTTGAG-ATTTGGTCAAGAAGCTGGGCTAACTTGTA 1772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25418478382
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5