BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942781
Length=1928
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09940.1 | Symbols: | P-loop containing nucleoside triphosp... 1288 0.0
> AT4G09940.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:6231786-6233397
FORWARD LENGTH=1185
Length=1185
Score = 1288 bits (697), Expect = 0.0
Identities = 960/1084 (89%), Gaps = 30/1084 (3%)
Strand=Plus/Plus
Query 476 CAGAAACTATGCCAGGGGATGGACTGGTTATGGAGGTTGGTTTGACAGAGTTCCCTATGG 535
||||| || | |||| |||| || |||| ||||||||| |||||||||| | || ||||
Sbjct 8 CAGAATCTCTCCCAGAGGATAAACCGGTTTTGGAGGTTGCTTTGACAGAGCTGCCAATGG 67
Query 536 T-GACTGAAACTTTGCCAGATGATGGTTCTGTTTTGGAGGTTTCTTGTGAGTTACGTTTA 594
| | | ||| |||||||||| |||||||||| |||||||||| ||||||| ||||||||
Sbjct 68 TCG-CAGAATCTTTGCCAGAGGATGGTTCTGGTTTGGAGGTTACTTGTGATTTACGTTTG 126
Query 595 GAGCAGAAACCTGCAAGAACCCTACTTTTGGTAGGGCGTTCAGGTAACGGGAAAAGCGCG 654
||||| |||||||||||||||||||||||||| || ||||| ||||| ||||||||||||
Sbjct 127 GAGCATAAACCTGCAAGAACCCTACTTTTGGTTGGACGTTCTGGTAATGGGAAAAGCGCG 186
Query 655 ACAGGGAATAGCATTCTTGGAA-AACCCGCCTTCAAGTCAAAAGGCCGTGCATCAGGGGT 713
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 187 ACAGGGAATAGCATTCTTGGAAGAA-AAGCCTTCAAGTCAAAAGGCCGTGCATCAGGGGT 245
Query 714 GACTACAGTCTGTGAGTC-ACAGAGTTCAATTCTACCCAATGGCCAGATCATCAATGTTA 772
|||||||| ||| ||| | ||||||||||| |||||||||||||||||||| || ||||
Sbjct 246 GACTACAGCCTGCGAG-CTACAGAGTTCAACGCTACCCAATGGCCAGATCATTAACGTTA 304
Query 773 TTGATACTCCTGGTCTATTTAGTCTGTCTCCATCCACCGAGTTTACGTGCAGAGAG-CTC 831
|||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 305 TTGATACTCCTGGTCTGTTTAGTCTGTCGCCATCAACCGAGTTTACGTGCAGAGAGATTC 364
Query 832 TTAAGGTGCTTCTCTCTGACCAAAGAAGGGATTGATGCAGTCCTT-TTGGTATTTTCCTT 890
| ||||||||||||||||||||||||||||||||||| || ||| || || || |||||
Sbjct 365 -TGAGGTGCTTCTCTCTGACCAAAGAAGGGATTGATGCGGTGCTTCTT-GTGTTCTCCTT 422
Query 891 G-AGAAACCGGCTAACAGAAGAGGAGAAATCTGCGCTTTTCGCATTAAAGAT-TTTGTTT 948
| || |||||||| |||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 423 GAAG-AACCGGCTCACAGAAGAGGAGAAATCTGCGCTTTTTGCATTAAAGATCCTT-TTC 480
Query 949 GGAAGCAAGATTGTAGACTACATGATTGTTGTTTTAACAAATGAAGATTCTCTTGAGGAG 1008
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 481 GGAAGCAAGATTGTAGACTACATGATTGTTGTTTTTACAAATGAAGATTCCCTTGAGGAT 540
Query 1009 GATGGTGACACATTTGAGGAATACTTGGAAGACTCTCCTGATTTCAAGGAAATTTTCAAG 1068
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |
Sbjct 541 GATGGTGATACATTTGAGGAATATTTGGAAGACTCTCCTGATTTCAAGGAAATTCTCGA- 599
Query 1069 GCC-TGCAATGACCGCAAGGTGTTGTTTCA-AAACAAGG-CCAAAGCCCATGAGAGTCAG 1125
||| |||||||| ||||||||||||||| | ||| ||| | || |||| || |||||||
Sbjct 600 GCCATGCAATGATCGCAAGGTGTTGTTT-AGAAA-TAGGTCTAATGCCCCTGTGAGTCAG 657
Query 1126 AAAGCTAAGCAAGTTCAGGAGCTCCTAAACTATGTTGAAGAGATTGCAAGGAAGAATGGG 1185
||||||||||||||||||||||| || |||||||||||||| ||||||||| ||||||
Sbjct 658 AAAGCTAAGCAAGTTCAGGAGCTTCTTAACTATGTTGAAGAAATTGCAAGGTTGAATGGA 717
Query 1186 AAACCCT-TCATGGATGATTTATCTCACGA-ACTAAGGGAAAATGAGACTGCATTCCAGA 1243
||| | | | |||| ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 718 AAATCGTAT-ATGGCTGATTTATCTCACGAGA-TAAGGGAAAATGAGACTGCATTCCAGA 775
Query 1244 TAAAGCAG-AGGGATATTTTAGAAATGAAGGGCTGGTACACAAAAGAAGAGATGTC-TCA 1301
|||||||| | ||| ||| |||| |||||||||| |||||||| | |||||||| | |||
Sbjct 776 TAAAGCAGCA-GGAGATTCTAGAGATGAAGGGCTTGTACACAAGACAAGAGATG-CTTCA 833
Query 1302 AAAGCTGAAAGATATGGAGAGGTCTTTTGAAAATCAGCAGCTCAGGCAAATGATGGAGAG 1361
|| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 834 AATGAAGAAAGATATGGAGAAGTCTTTTGAAAATCAGCAGCTCAGGCAAATGATGGAGAG 893
Query 1362 GGTGGAGACTCAGCTGAGAGAGACAAAAGAGAGGCTAGAGCAGCAGCT-AAACCAAGAGC 1420
|||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 894 GGTGGAGACTGAGCTGAGAGAGACAAAAGAGAGGCTAGAGCAGCAGCTGAAAG-AAGAGA 952
Query 1421 AAGCTTCAAGACTTGAAATGGAGAAAAGAGCAAAGGAAGTCGAGAAACAGTCAAGTGATG 1480
|| || | ||||||||| |||||||||||||||| ||||||||||||| |||||||||||
Sbjct 953 AATCTGCTAGACTTGAATTGGAGAAAAGAGCAAAAGAAGTCGAGAAACGGTCAAGTGATG 1012
Query 1481 TAGTAAAGAAGCTGAACGAAGAGCAAACTGCAAGACTTGAATTGGAGAAAAGAGCAAAGG 1540
|||||||| |||||||||| |||||| || ||||||||||| ||||| ||||||||||
Sbjct 1013 TAGTAAAGGAGCTGAACGATGAGCAAGCTAAAAGACTTGAATCGGAGAGTAGAGCAAAGG 1072
Query 1541 AAGC 1544
||||
Sbjct 1073 AAGC 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95481436590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5