BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942782
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09940.1 | Symbols: | P-loop containing nucleoside triphosp... 233 2e-60
> AT4G09940.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:6231786-6233397
FORWARD LENGTH=1185
Length=1185
Score = 233 bits (126), Expect = 2e-60
Identities = 183/209 (88%), Gaps = 9/209 (4%)
Strand=Plus/Plus
Query 29 CTGTGAGCTACAGAGTTCGACGCTACCTAATGGCCAGATCCTCAATGTTATTGATACTCC 88
||| |||||||||||||| |||||||| |||||||||||| | || ||||||||||||||
Sbjct 255 CTGCGAGCTACAGAGTTCAACGCTACCCAATGGCCAGATCATTAACGTTATTGATACTCC 314
Query 89 TGGTCTGTTTAGTCTGTCTCCATCAACCGAGTTTACGTGCAGAGAGATTTTGAGGTGCTT 148
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 315 TGGTCTGTTTAGTCTGTCGCCATCAACCGAGTTTACGTGCAGAGAGATTCTGAGGTGCTT 374
Query 149 AGCTCTGACCAAAGATGGGATTGATGCAGTACTA-TTGGTATTTTCCTTGA-G----G-C 201
||||||||||||| ||||||||||| || || ||| | || ||||||| | | |
Sbjct 375 CTCTCTGACCAAAGAAGGGATTGATGCGGTGCTTCTTG-TGTTCTCCTTGAAGAACCGGC 433
Query 202 TAACAGAAGAGGAGAAAATCTGCGCTTTT 230
| ||||||||||||||| |||||||||||
Sbjct 434 TCACAGAAGAGGAGAAA-TCTGCGCTTTT 461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39936146865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5