BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942788

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24830.1 | Symbols:  | arginosuccinate synthase family | chr...   259    1e-68


> AT4G24830.1 | Symbols:  | arginosuccinate synthase family | chr4:12792873-12795974 
REVERSE LENGTH=1814
Length=1814

 Score =  259 bits (140),  Expect = 1e-68
 Identities = 173/189 (92%), Gaps = 2/189 (1%)
 Strand=Plus/Plus

Query  135  ATTCGAGCTGTTCTATCCGGTGATGGAACGGCCCTGGCTGCTGATTCAAAGGAGGCTGGA  194
            ||||||||||||||||||||||||||||| ||| || || ||||||||||||||||||||
Sbjct  331  ATTCGAGCTGTTCTATCCGGTGATGGAACCGCCTTGACTACTGATTCAAAGGAGGCTGGA  390

Query  195  CTTTGTGGAAAACTTaaaaaaaGTCGTTCTAGCTTTACAGTGGAGGCTTGGATACCTCTG  254
            ||| |||||||||| |||||  ||||||||||||| ||||||||||||| || |||||||
Sbjct  391  CTTCGTGGAAAACTGAAAAAG-GTCGTTCTAGCTT-ACAGTGGAGGCTTAGACACCTCTG  448

Query  255  TCATTGTGCCATGGCTTAAGGAGAACTACGGTTGTGAAGTTGTATGTTTCACCGCCGATG  314
            |||||||||||||||||||||||||||| |||||||||||||| || ||||| || ||||
Sbjct  449  TCATTGTGCCATGGCTTAAGGAGAACTATGGTTGTGAAGTTGTGTGCTTCACTGCTGATG  508

Query  315  TTGGTCAGG  323
            |||||||||
Sbjct  509  TTGGTCAGG  517



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17995854142


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5