BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942790
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10000.1 | Symbols: | Thioredoxin family protein | chr4:626... 1570 0.0
> AT4G10000.1 | Symbols: | Thioredoxin family protein | chr4:6260469-6263156
REVERSE LENGTH=1343
Length=1343
Score = 1570 bits (850), Expect = 0.0
Identities = 982/1044 (94%), Gaps = 15/1044 (1%)
Strand=Plus/Plus
Query 3 CAGTTTTTGATAGGAGCAATG-CAAATTTCGGTGGTTAATAGCAGTTTCTGCCATCCGAT 61
||||||||||||||| ||||| | ||||||||||||| |||||||| ||||||||||||
Sbjct 86 CAGTTTTTGATAGGAACAATGTC-AATTTCGGTGGTTGATAGCAGTCTCTGCCATCCGAC 144
Query 62 TGCGTCGTTTCCGTCATCCACGTTTCATTCTTATCGACCTCATCGATTCTCAAATAGAAT 121
|||||||||||||||||||| | ||||||| | | |||||||||| || |||||
Sbjct 145 TGCGTCGTTTCCGTCATCCATGGTTCATTC---T--A----ATCGATTCTCGAAGAGAAT 195
Query 122 TTCAGGAAACGGTAGTTGGGTTCGCGAAAGGAGAAGACTTTCTGTGAAATCTAGTAACTC 181
||||| ||||| | |||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 196 ATCAGGGAACGGGAATTGGGTTCGCGAAAGGAGAAGACTTTATGTGAAATCGAGTAACTC 255
Query 182 AGAA-GCAAAATCGAATGAATCATCACAGAAATCGAGCAGCAATAGTACATCAAGCTTCT 240
|||| | |||| | | ||| || |||||||||||||||| |||| |||||| |||||||
Sbjct 256 AGAAGGTAAAA-AGGAGGAAGCAGCACAGAAATCGAGCAGTAATAATACATCTAGCTTCT 314
Query 241 TGTCCTTTCTCTGTCCATTGCTTAAAGTTTTCTCTGGAGGTGATCCTTCTCAACGA-CGG 299
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 315 TGTCTTTTCTCTGTCCATTGCTTAAAGTTTTCTCTGGAGGTGATCCTTCTCAAC-AGCGG 373
Query 300 AATCATGCTCTGGAGGTTGCAACTTCTTCATTAGCATCTGTTGCAAGACTTCCATGGGGA 359
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 374 AATCATGCTCTCGAGGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGA 433
Query 360 TCTCGAGTATCAACTGGGAGTATAGATAACCAAGATGTTTCTTCTAATCCGCCTTTGCGA 419
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 434 TCTCGAGTATCAACTGGGAGTATAGATAACCAGGATGTCTCTTCTAATCCGCCTTTGCGA 493
Query 420 TTGCAGCTTTTTGAATTTGAGGCGTGTCCCTTTTGCCGGAGGGTGCGGGAAGCCATGACT 479
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 494 TTGCAGCTTTTTGAATTTGAGGCATGTCCCTTTTGTCGGAGAGTGCGGGAAGCCATGACT 553
Query 480 GAGCTAGACCTTTCTGTAGAAGTTTATCCTTGTCCTAAAGGATCTTTAAGACACAGAGAA 539
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 554 GAGCTAGACCTTTCAGTAGAAGTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAA 613
Query 540 CTGGTTAGACGATCTGGCGGAAAAGAGATGTTTCCATTCCTCGTCGACCCGAATACTGAA 599
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 614 CTGGTTAGAAGATCTGGCGGAAAAGAGATGTTTCCATTTCTCGTCGACCCGAATACTGAA 673
Query 600 ACTTTAATGTATGAGAGTGGTGACATTGTAAAGTACCTATTTAAACAATATGGAAATGGA 659
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 674 ACTTTAATGTATGAGAGTGGTGACATCGTAAAGTACCTATTTAAACAATATGGAAATGGA 733
Query 660 AGAGGCCCTTCCACAGGACTTCTGGAAAGCACCTTGTTCACTGGATGGATGCCAACTCTT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 AGAGGCCCTTCCACAGGACTTCTGGAAAGCACCTTGTTCACTGGATGGATGCCAACTCTT 793
Query 720 CTCCGAGCAGGTAGAGGAATGTCATTGTGGGACAAGGCTTCAACAGATCTGCCACCTAAA 779
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 794 CTCCGAGCAGGTAGAGGCATGTCATTGTGGGATAAGGCTTCAACAGATCTGCCACCTAAA 853
Query 780 ATGCTCGAGCTCTTCTCTTACGAAAACAACCCGTATTCACGGTTGGTGCGTGAAGCACTG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 ATGCTCGAGCTCTTCTCTTACGAAAACAACCCGTATTCACGGTTGGTGCGTGAAGCACTG 913
Query 840 TGTGAGCTGGAGCTCCCCTATGTATTACACAACATTGGAGAAGGGTCCACACGGATGAAA 899
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 TGTGAGCTGGAGCTTCCCTATGTATTACACAACATTGGAGAAGGGTCCACACGGATGAAA 973
Query 900 TCGCTTCTAAAGGCTTCAGGATCCAATAAGGTTCCATTCTTGGTTGATCCAAACACTGGT 959
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 974 TCACTTCTAAATGCTTCAGGATCCAATAAGGTTCCATTCTTGGTTGATCCAAACACCGGT 1033
Query 960 GTCCAATTAGGTGATTACCAAAAGATTCTGACTTACCTCTTCAAGACTTATTCTTCAGCA 1019
|||||||||||||||||| | ||||||||| |||||||||||||||| ||||||||||||
Sbjct 1034 GTCCAATTAGGTGATTACGAGAAGATTCTGGCTTACCTCTTCAAGACATATTCTTCAGCA 1093
Query 1020 GCATCTGCATAGTCCATAGAACCt 1043
|||| |||||||||||||||||||
Sbjct 1094 GCATTTGCATAGTCCATAGAACCT 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51540234822
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5