BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942791
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10010.1 | Symbols: | Protein kinase superfamily protein | ... 2143 0.0
AT1G33770.1 | Symbols: | Protein kinase superfamily protein | ... 913 0.0
> AT4G10010.1 | Symbols: | Protein kinase superfamily protein
| chr4:6263597-6266245 REVERSE LENGTH=2132
Length=2132
Score = 2143 bits (1160), Expect = 0.0
Identities = 1367/1465 (93%), Gaps = 21/1465 (1%)
Strand=Plus/Plus
Query 1 GGGACCTTGAGACTGGTAAAATGGTAGCCATGAAGAAGGTCAGGTTCGTTAATATGGATC 60
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 422 GGGATCTTGAGACCGGTAAAATGGTAGCAATGAAGAAGGTCAGGTTCGTTAATATGGATC 481
Query 61 CAGAAAGCGTGAGATTCATGGCCAGAGAAATAC-ACATCTTGCGGAAACTTGACCATCCA 119
| |||||||||||||||||||| |||||||| | |||||||||||||||| |||||||||
Sbjct 482 CGGAAAGCGTGAGATTCATGGCTAGAGAAAT-CAACATCTTGCGGAAACTAGACCATCCA 540
Query 120 AACGTTATGAAGCTTGAGTGTCTTGTGACTTCAAAACTCTCTGGTAGCTTGTACCTTGTG 179
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 541 AACGTTATGAAGCTTGAATGTCTTGTGACCTCTAAACTCTCTGGTAGCTTGTACCTTGTG 600
Query 180 TTTGAGTACATGGAGCACGACCTTTCGGGCCTCGCTCTTAGACCTGGTGTAAAATTTACT 239
||||||||||||||||| || ||||| || |||||||||||||| |||||||||||||||
Sbjct 601 TTTGAGTACATGGAGCATGATCTTTCCGGTCTCGCTCTTAGACCCGGTGTAAAATTTACT 660
Query 240 GAATCACAAATCAAATGTTACATGAAACAACTGCTTAGCGGGCTTGAACACTGCCACAGC 299
||||| || ||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 661 GAATCTCAGATCAAATGTTACATGAAACAATTGCTTAGCGGGCTTGAGCACTGCCACAGC 720
Query 300 CGTGGAATCCTCCACCGCGACATTAAAGGTTCAAATCTCTTGGTAAACAATGATGGAGTC 359
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 721 CGTGGAATCCTCCACCGCGACATTAAGGGTCCAAATCTCTTGGTAAACAATGATGGAGTC 780
Query 360 CTCAAGATTGGAGATTTTGGTCTGGCGAATTTCTATCATCCAGAACAAGATCAACCCTTG 419
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 781 CTCAAGATTGGAGATTTTGGTCTGGCGAATATCTATCATCCAGAACAAGATCAACCTTTG 840
Query 420 ACGAGCCGTGTAGTAACCTTGTGGTACAGGGCCCCTGAGCTTCTTCTAGGAGCTACAGAG 479
||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 841 ACGAGCCGTGTAGTAACCTTGTGGTACAGAGCCCCTGAGCTTCTACTGGGAGCTACAGAA 900
Query 480 TATGGTCCCGGGATAGATCTGTGGAGTGTTGGTTGCATTCTCACAGAACTGTTTTTAGGG 539
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TATGGTCCAGGGATAGATTTGTGGAGTGTTGGTTGCATTCTCACAGAACTGTTTTTAGGG 960
Query 540 AAACCAATCATGCCGGGAAGAACAGAGGTGGAGCAAATGCATAAGATCTTCAAGTTGTGT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 AAACCAATCATGCCGGGAAGAACAGAGGTGGAGCAAATGCATAAGATCTTCAAGTTTTGT 1020
Query 600 GGTTCACCAAGTGATGATTACTGGAAAAAGACAAAGCTACCACTTGCCACAAGTTTCAAG 659
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1021 GGTTCACCAAGTGATGATTACTGGCAAAAGACAAAGCTACCACTTGCAACAAGTTTCAAG 1080
Query 660 CCACAACAACCTTACAAGCGTGTCCTTTTAGAGACTTTCAAGAACTTACCATCTTCTGCT 719
|| ||||||||||| || ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1081 CCGCAACAACCTTATAAACGTGTCCTTCTAGAGACTTTCAAGAACTTACCACCTTCTGCT 1140
Query 720 CTAGCTCTTGTTGACAAGCTTCTATGCTTAGAACCAGAGAAGCGTGGCACAGCTTCTTCG 779
||||||||||||||||| ||||||| ||||||||||| |||||||||||| |||||||||
Sbjct 1141 CTAGCTCTTGTTGACAAACTTCTATCCTTAGAACCAGCGAAGCGTGGCACGGCTTCTTCG 1200
Query 780 ACGCTAAGTAGCAAGTTCTTTACAATGGAACCACTCCCATGTGATGTATCAAGTTTGCCA 839
|| ||||||||||||||||| || |||||||||||||| ||| |||||||||||||||||
Sbjct 1201 ACACTAAGTAGCAAGTTCTTCACTATGGAACCACTCCCTTGTAATGTATCAAGTTTGCCA 1260
Query 840 AAGTATCCTCCAAGCAAGGAACTTGACGCAAAGGTCCGTGATGAAGAAGCAAGAAGAAAA 899
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1261 AAGTATCCTCCAAGCAAGGAACTTGATGCAAAGGTCCGTGATGAAGAAGCAAGAAGGAAA 1320
Query 900 AAGGCTGAAACCGTGAAGGGTCGTGGACCTGAATCTGTGAGACGGGGTTCGAGAGACTTC 959
||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1321 AAGTCTGAAACGGTGAAGGGTCGTGGACCTGAATCTGTGAGACGAGGTTCGAGAGACTTC 1380
Query 960 AAAAGTACTGCTATAACACCGGAGTTCGTTGCTTCAGGGCATTCAAAAGACACAATCACC 1019
|| |||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1381 AAGAGTACTGCTACAACACCAGAGTTCGTTGCTTCAGGGCAGTCAAAAGACACAATCACC 1440
Query 1020 ACAAAAAGGTTCAATCCTCAGGAAGACAGTAGAACCGGTTTGAGAGGAGAGACGGGAAGA 1079
|| || || |||||||||||||||||||||||||| || |||||||| || | | | ||
Sbjct 1441 ACCAAGAGATTCAATCCTCAGGAAGACAGTAGAACAGGCTTGAGAGGCGACA-G--A-GA 1496
Query 1080 GGCGACAGAGAGAAAGGCTTTTCTCATACCAATTCAATGATTCATCCAAGCATAGCTGCA 1139
| | || | | ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1497 T-C-A--GA-A-A--GGCTTTTCTCATACCAATTCAATGATTCATCCAAGCATAACAGCA 1548
Query 1140 ACATGGAGTAAAAATGAGAGCTCTAGGAACAATGTAGTTGAGCTAAAGGCTACTCGATCA 1199
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1549 ACATGGAGTAAAAATGAGAGCTGTAGGAACAATGTAGTTGAGCTAAAGGCTACTCGATCA 1608
Query 1200 AGCAACGTGCCTATGACTGGGAGATACTTGTCTCCATCACATAAAGAAGATGTAGCCGTA 1259
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1609 AGCAATGTGCCCATGACTGGGAGATACTTGTCTCCTTCACATAAAGAAGATGTAGCCGTA 1668
Query 1260 GAAACCACAACGACATACGTACGCAAGAAGAACAGAATGCATTGTTCGGGTCCATTGATG 1319
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1669 CAAACCACAACGACATACGTACGCAAGAAGAACAGAATGCATTGTTCGGGACCATTGATG 1728
Query 1320 CCTCCCGGTGGAAACATTGAGGACATTCTT-AAAGACCATGAGAGACAAATCCAAGAAGC 1378
||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1729 CCTCCTGGTGGAAACATTGAGGACATA-TTGAAAGACCATGAGAGACAAATCCAAGAAGC 1787
Query 1379 TGTAAGGAAATCGCGGCTTGAAAAATCAGCAACAAGGAAAAATAACAAAACATGTGCTAA 1438
|||||||||||| |||||||| ||||| || ||||||||||||||||||||||||| |||
Sbjct 1788 TGTAAGGAAATCACGGCTTGAGAAATCTGCTACAAGGAAAAATAACAAAACATGTG-TAA 1846
Query 1439 -GTAGAAGAATAAGACATGGATGAA 1462
|| ||| | ||||||||||||||
Sbjct 1847 AGT-GAA-AG-AAGACATGGATGAA 1868
> AT1G33770.1 | Symbols: | Protein kinase superfamily protein
| chr1:12242126-12244462 FORWARD LENGTH=1845
Length=1845
Score = 913 bits (494), Expect = 0.0
Identities = 848/1017 (83%), Gaps = 31/1017 (3%)
Strand=Plus/Plus
Query 1 GGGACCTTGAGACTGGTAAAATGGTAGCCATGAAGAAGGTCAGGTTCGTTAATATGGATC 60
|||| |||||||| || ||||| || || ||||||||||| ||||| | |||||||||||
Sbjct 476 GGGATCTTGAGACAGGCAAAATCGTGGCAATGAAGAAGGTGAGGTTTGCTAATATGGATC 535
Query 61 CAGAAAGCGTGAGATTCATGGCCAGAGAAATAC-ACATCTTGCGGAAACTTGACCATCCA 119
| ||||| || || |||||||| |||||||| | |||| || || ||||| |||||||||
Sbjct 536 CTGAAAGTGTAAGGTTCATGGCTAGAGAAAT-CAACATTTTACGAAAACTCGACCATCCA 594
Query 120 AACGTTATGAAGCTTGAGTGTCTTGTGACTTCAAAACTCTCTGGTAGCTTGTACCTTGTG 179
|| |||||||||||| |||||||||| |||||||| || || ||||||||| |||||||
Sbjct 595 AATGTTATGAAGCTTCAGTGTCTTGTCACTTCAAAGCTATCAGGTAGCTTGCACCTTGTA 654
Query 180 TTTGAGTACATGGAGCACGACCTTTCGGGCCTCGCTCTTAGACCTGGTGTAAAATTTACT 239
||||||||||||||||| || ||||| ||| | |||||||| |||||||| ||||| |||
Sbjct 655 TTTGAGTACATGGAGCATGATCTTTCAGGCTTGGCTCTTAGGCCTGGTGTCAAATTCACT 714
Query 240 GAATCACAAATCAAATGTTACATGAAACAACTGCTTAGCGGGCTTGAACACTGCCACAGC 299
||| |||| ||||| |||| ||||||||||| ||| | || ||||| || || || |||
Sbjct 715 GAACCACAGATCAAGTGTTTTATGAAACAACTTCTTTGTGGACTTGAGCATTGTCATAGC 774
Query 300 CGTGGAATCCTCCACCGCGACATTAAAGGTTCAAATCTCTTGGTAAACAATGATGGAGTC 359
||||||||||| ||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct 775 CGTGGAATCCTTCACCGTGACATCAAGGGTTCAAATCTTTTGGTAAACAATGATGGAGTT 834
Query 360 CTCAAGATTGGAGATTTTGGTCTGGCGAATTTCTATCATCCAGAACAAGATCAACC-CTT 418
|| ||||| |||||||| |||||||||| ||| ||| | ||||| ||||||||||| | |
Sbjct 835 CTTAAGATCGGAGATTTCGGTCTGGCGAGTTTTTATAAACCAGATCAAGATCAACCAC-T 893
Query 419 GACGAGCCGTGTAGTAACCTTGTGGTACAGGGCCCCTGAGCTTCTTCTAGGAGCTACAGA 478
||| ||||||||||| ||||||||||| || || ||||||||||| || ||| |||||||
Sbjct 894 GACTAGCCGTGTAGTCACCTTGTGGTATAGAGCTCCTGAGCTTCTACTTGGATCTACAGA 953
Query 479 GTATGGTCCCGGGATAGATCTGTGGAGTGTTGGTTGCATTCTCACAGAACTGTTTTTAGG 538
|||||| |||| || ||||| ||||| ||||||||||||||| | ||||| ||| || |
Sbjct 954 GTATGGACCCGCCATTGATCTCTGGAGCGTTGGTTGCATTCTCGCTGAACTCTTTGTATG 1013
Query 539 GAAACCAATCATGCCGGGAAGAACAGAGGTGGAGCAAATGCATAAGATCTTCAAGTTGTG 598
||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||
Sbjct 1014 TAAACCAATCATGCCGGGAAGAACAGAGGTCGAGCAAATGCACAAGATCTTTAAACTGTG 1073
Query 599 TGGTTCACCAAGTGATGA-TTACTGGAAAAAGACAAAGCTACCACTTGCCACAAGTTTCA 657
|||||||||| ||| || || |||||| | ||||||| | |||| || ||||||| ||
Sbjct 1074 TGGTTCACCATCTGAAGAGTT-CTGGAATACGACAAAGTTCCCACAGGCGACAAGTTACA 1132
Query 658 AGCCACAACAACCTTACAAGCGTGTCCTTTTAGAGACTTTCAAGAA-CTTACCATCTTCT 716
| || ||||| ||||| |||||||||||| ||||||| |||||||| || | ||||||||
Sbjct 1133 AACCGCAACATCCTTATAAGCGTGTCCTTCTAGAGACGTTCAAGAATCT-ATCATCTTCT 1191
Query 717 GCTCTAGCTCTTGTTGACAAGCTTCTATGCT-TAGAACCAGAGAAGCG-TGGCACAGCTT 774
|||||| |||| ||||||||||||||| || ||||||||||||| || || | ||||||
Sbjct 1192 TCTCTAGATCTTCTTGACAAGCTTCTAT-CTGTAGAACCAGAGAAACGATG-CTCAGCTT 1249
Query 775 CTTCGACGCTAA-GTAGCAAGTTCTTTACAATGGAACCACTCCCATGTGATGTATCAAGT 833
||||||| ||| | || |||| ||||||| ||| || ||||| ||| | ||||||||
Sbjct 1250 CTTCGACTCTACTG-AGTGAGTTTTTTACAACGGAGCCTCTCCCTTGTCACATATCAAGT 1308
Query 834 TTGCCAAAGTATCCTCCAAGCAAGGAACTTGACGCAAAGGTCCGTGATGAAGAAGC-AAG 892
||||| |||||||| |||||||||||||| || |||||||| || || |||||||| ||
Sbjct 1309 TTGCCTAAGTATCCACCAAGCAAGGAACTCGATGCAAAGGTTCGAGACGAAGAAGCTAA- 1367
Query 893 AAG-AAAAAAGGCTGAAACCGTGAAG-GGTCGTGGACCTGAATCTGTGAGACG-GGGTTC 949
||| ||||||| ||||| | |||||| || ||||||| ||||||||||||| | |||||
Sbjct 1368 AAGGAAAAAAG-CTGAAGCTGTGAAGTGG-CGTGGACATGAATCTGTGAGAAGAGGGTTA 1425
Query 950 GAGAGACTTCAAAAGTACTGCTATAACACCGGAGTTCGTTGCTTCAGGGCATTCAAA 1006
||||||| ||| | | || | |||| |||||| |||||||||| |||||||
Sbjct 1426 -AGAGACTCCAA--G----G-TA-A-CACCAGAGTTCATTGCTTCAGGAAATTCAAA 1472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72087982620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5