BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942793 Length=1193 Score E Sequences producing significant alignments: (Bits) Value AT4G10020.1 | Symbols: AtHSD5, HSD5 | hydroxysteroid dehydrogen... 1738 0.0 > AT4G10020.1 | Symbols: AtHSD5, HSD5 | hydroxysteroid dehydrogenase 5 | chr4:6268289-6270434 FORWARD LENGTH=1499 Length=1499 Score = 1738 bits (941), Expect = 0.0 Identities = 1080/1148 (94%), Gaps = 6/1148 (1%) Strand=Plus/Plus Query 1 TTGTTATTTTCGAAA--GAAGAG--AAATGGTGGACCTATTGAACTCGGTGATGAACCTG 56 ||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||| Sbjct 48 TTGTTATTTTCGAAAGTGAAGAGAAAAATGGTGGATCTATTGAACTCGGTGATGAACCTG 107 Query 57 GTGGCGCCTCCTGCCACGATGGTGGTGATGGCCTTCGCATGGCCATTACTGTCTTTCATT 116 ||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||| Sbjct 108 GTGGCGCCTCCAGCGACCATGGTGGTGATGGCCTTTGCATGGCCATTACTGTCTTTCATT 167 Query 117 AGCTTCTCCGAACGGGTTTACAACTCCTATTTCGCTACCGAAAACATGGAAGATAAAGTT 176 |||||||||||||||| ||||||||| |||||||| |||||||| |||||||||||||| Sbjct 168 AGCTTCTCCGAACGGGCTTACAACTCTTATTTCGCCACCGAAAATATGGAAGATAAAGTA 227 Query 177 GTCGTAATCACCGGAGCTTCCTCAGCCATTGGAGAGCAAATAGCATATGAATATGCAAAG 236 || || |||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 228 GTTGTCATCACCGGAGCTTCATCGGCCATTGGAGAGCAAATAGCATATGAATATGCAAAA 287 Query 237 AGAGGAGCAAATTTGGTGTTGGTGGCGAGGAGAGAGCAGAGACTGAGAGTTGTGAGCAAT 296 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 288 AGAGGAGCGAATTTGGTGTTGGTGGCGAGGAGAGAGCAGAGACTGAGAGTTGTGAGTAAT 347 Query 297 AAGGCCAAAGAGATTGGAGCCAACCACGTCATCATCATCGCTGCTGATGTCATCAAAGAA 356 ||||| ||| |||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 348 AAGGCTAAACAGATTGGAGCCAACCATGTGATCATCATCGCTGCTGATGTCATCAAAGAA 407 Query 357 GATGATTGCTGCCGTTTCATCACCCAAGCCGTCAACTACTACGGCCGCGTGGATCACCTA 416 ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||| Sbjct 408 GATGACTGCCGCCGTTTTATCACCCAAGCCGTCAACTATTACGGCCGCGTGGATCATCTA 467 Query 417 GTGAATACAGCGAGTCTTGGACACACTTTTTACTTTGAGGAAGTGAGTGACACGACTGTG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 GTGAATACAGCGAGTCTTGGACACACTTTTTACTTTGAGGAAGTGAGTGACACGACTGTG 527 Query 477 TTTCCGCATTTGCTGGACATAAACTTCTGGGGGAATGTTTATCCGACATACGTAGCATTG 536 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 528 TTTCCACATTTGCTGGACATAAACTTCTGGGGGAATGTTTATCCGACATACGTAGCGTTG 587 Query 537 CCATATCTTCATCAGACGAATGGCCGGATAGTCGTGAATGCATCGGTTGAGAACTGGTTG 596 ||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 588 CCATACCTTCACCAGACGAATGGCCGAATAGTCGTGAATGCATCGGTTGAAAACTGGTTG 647 Query 597 CCTCTACCACGGATGAGTCTTTATTCTGCTGCAAAAGCAGCATTAGTCAACTTCTATGAG 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 648 CCTCTACCACGGATGAGTCTTTATTCTGCTGCAAAAGCAGCATTAGTCAACTTCTATGAG 707 Query 657 ACGCTAAGATTCGAGCTAAATGGAGACGTGGGAATAACTATCGCAACTCATGGATGGATC 716 ||||| | |||||||||||||||||||| || ||||||||||| ||||| || ||||| Sbjct 708 ACGCTGCGTTTCGAGCTAAATGGAGACGTTGGTATAACTATCGCGACTCACGGGTGGATT 767 Query 717 GGGAGTGAGATGAGTAGAGGAAAGTTCATGCTAGAAGAAGGTGCTGAGATGCAATGGAAG 776 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 768 GGCAGTGAGATGAGTGGAGGAAAGTTCATGCTAGAAGAAGGTGCTGAGATGCAATGGAAG 827 Query 777 GAAGAAAGAGAAGTACCTGCAAACGGTGGGCCGCTAGAGGAATTTGCAAAGATGATTGTG 836 ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 828 GAAGAGAGAGAAGTACCTGCAAATGGTGGACCGCTAGAGGAATTTGCAAAGATGATTGTG 887 Query 837 GCGGGAGCTTGTAGGGGAGACGCGTATGTGAAGTTCCCAAACTGGTACGATGTGTTTCTC 896 || ||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||| Sbjct 888 GCAGGAGCTTGTAGGGGAGATGCATATGTGAAGTTTCCAAACTGGTACGATGTCTTTCTC 947 Query 897 CTCTATAGAGTCTTCACGCCGAATGTGCTTAGATGGACATTCAAGTTGTTACTGTCTACC 956 |||||| |||||||||| |||||||| || ||||||||||||||||||||||||||||| Sbjct 948 CTCTATCGAGTCTTCACACCGAATGTACTGAGATGGACATTCAAGTTGTTACTGTCTACT 1007 Query 957 GAGGGTTCACGTAGAAGCTCCCTTGTTGGGGTCGGGTCGGGTATGCCTGTGGATGAATCC 1016 |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1008 GAGGGTACACGTAGAAGCTCCCTTGTTGGGGTCGGGTCAGGTATGCCTGTGGATGAATCC 1067 Query 1017 TCTTCACAAATGAAACTTATGCTTGAAGGAGGCCCACCTCG-GTTTCCCGCAAGCCCACC 1075 |||||||||||||||||||||||||||||||| |||||||| ||| || ||||||||||| Sbjct 1068 TCTTCACAAATGAAACTTATGCTTGAAGGAGGACCACCTCGAGTT-CCTGCAAGCCCACC 1126 Query 1076 TAGGTATACTGCAAGCCCACCTCATTATACCGCAAGCCCACCACGGTATCCTGCGAGCCC 1135 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1127 TAGGTATACCGCAAGCCCACCTCATTATACCGCAAGCCCACCACGGTATCCTGCAAGCCC 1186 Query 1136 ACCTCGGT 1143 |||||||| Sbjct 1187 ACCTCGGT 1194 Score = 113 bits (61), Expect = 3e-24 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 1119 CGGTATCCTGCGAGCCCACCTCGGTTTGCACAGTTTAATATCCAAGAGTTGTAATAAAAG 1178 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1191 CGGTATCCTGCGAGCCCACCTCGGTTTTCACAGTTTAATATCCAAGAGTTGTAATAAAAA 1250 Query 1179 CCGGATGGAG 1188 | |||||||| Sbjct 1251 CTGGATGGAG 1260 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58584036015 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5