BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942793
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10020.1 | Symbols: AtHSD5, HSD5 | hydroxysteroid dehydrogen... 1738 0.0
> AT4G10020.1 | Symbols: AtHSD5, HSD5 | hydroxysteroid dehydrogenase
5 | chr4:6268289-6270434 FORWARD LENGTH=1499
Length=1499
Score = 1738 bits (941), Expect = 0.0
Identities = 1080/1148 (94%), Gaps = 6/1148 (1%)
Strand=Plus/Plus
Query 1 TTGTTATTTTCGAAA--GAAGAG--AAATGGTGGACCTATTGAACTCGGTGATGAACCTG 56
||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 48 TTGTTATTTTCGAAAGTGAAGAGAAAAATGGTGGATCTATTGAACTCGGTGATGAACCTG 107
Query 57 GTGGCGCCTCCTGCCACGATGGTGGTGATGGCCTTCGCATGGCCATTACTGTCTTTCATT 116
||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 108 GTGGCGCCTCCAGCGACCATGGTGGTGATGGCCTTTGCATGGCCATTACTGTCTTTCATT 167
Query 117 AGCTTCTCCGAACGGGTTTACAACTCCTATTTCGCTACCGAAAACATGGAAGATAAAGTT 176
|||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 168 AGCTTCTCCGAACGGGCTTACAACTCTTATTTCGCCACCGAAAATATGGAAGATAAAGTA 227
Query 177 GTCGTAATCACCGGAGCTTCCTCAGCCATTGGAGAGCAAATAGCATATGAATATGCAAAG 236
|| || |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 228 GTTGTCATCACCGGAGCTTCATCGGCCATTGGAGAGCAAATAGCATATGAATATGCAAAA 287
Query 237 AGAGGAGCAAATTTGGTGTTGGTGGCGAGGAGAGAGCAGAGACTGAGAGTTGTGAGCAAT 296
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 288 AGAGGAGCGAATTTGGTGTTGGTGGCGAGGAGAGAGCAGAGACTGAGAGTTGTGAGTAAT 347
Query 297 AAGGCCAAAGAGATTGGAGCCAACCACGTCATCATCATCGCTGCTGATGTCATCAAAGAA 356
||||| ||| |||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 348 AAGGCTAAACAGATTGGAGCCAACCATGTGATCATCATCGCTGCTGATGTCATCAAAGAA 407
Query 357 GATGATTGCTGCCGTTTCATCACCCAAGCCGTCAACTACTACGGCCGCGTGGATCACCTA 416
||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 408 GATGACTGCCGCCGTTTTATCACCCAAGCCGTCAACTATTACGGCCGCGTGGATCATCTA 467
Query 417 GTGAATACAGCGAGTCTTGGACACACTTTTTACTTTGAGGAAGTGAGTGACACGACTGTG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GTGAATACAGCGAGTCTTGGACACACTTTTTACTTTGAGGAAGTGAGTGACACGACTGTG 527
Query 477 TTTCCGCATTTGCTGGACATAAACTTCTGGGGGAATGTTTATCCGACATACGTAGCATTG 536
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 528 TTTCCACATTTGCTGGACATAAACTTCTGGGGGAATGTTTATCCGACATACGTAGCGTTG 587
Query 537 CCATATCTTCATCAGACGAATGGCCGGATAGTCGTGAATGCATCGGTTGAGAACTGGTTG 596
||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 588 CCATACCTTCACCAGACGAATGGCCGAATAGTCGTGAATGCATCGGTTGAAAACTGGTTG 647
Query 597 CCTCTACCACGGATGAGTCTTTATTCTGCTGCAAAAGCAGCATTAGTCAACTTCTATGAG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CCTCTACCACGGATGAGTCTTTATTCTGCTGCAAAAGCAGCATTAGTCAACTTCTATGAG 707
Query 657 ACGCTAAGATTCGAGCTAAATGGAGACGTGGGAATAACTATCGCAACTCATGGATGGATC 716
||||| | |||||||||||||||||||| || ||||||||||| ||||| || |||||
Sbjct 708 ACGCTGCGTTTCGAGCTAAATGGAGACGTTGGTATAACTATCGCGACTCACGGGTGGATT 767
Query 717 GGGAGTGAGATGAGTAGAGGAAAGTTCATGCTAGAAGAAGGTGCTGAGATGCAATGGAAG 776
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GGCAGTGAGATGAGTGGAGGAAAGTTCATGCTAGAAGAAGGTGCTGAGATGCAATGGAAG 827
Query 777 GAAGAAAGAGAAGTACCTGCAAACGGTGGGCCGCTAGAGGAATTTGCAAAGATGATTGTG 836
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 828 GAAGAGAGAGAAGTACCTGCAAATGGTGGACCGCTAGAGGAATTTGCAAAGATGATTGTG 887
Query 837 GCGGGAGCTTGTAGGGGAGACGCGTATGTGAAGTTCCCAAACTGGTACGATGTGTTTCTC 896
|| ||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct 888 GCAGGAGCTTGTAGGGGAGATGCATATGTGAAGTTTCCAAACTGGTACGATGTCTTTCTC 947
Query 897 CTCTATAGAGTCTTCACGCCGAATGTGCTTAGATGGACATTCAAGTTGTTACTGTCTACC 956
|||||| |||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 948 CTCTATCGAGTCTTCACACCGAATGTACTGAGATGGACATTCAAGTTGTTACTGTCTACT 1007
Query 957 GAGGGTTCACGTAGAAGCTCCCTTGTTGGGGTCGGGTCGGGTATGCCTGTGGATGAATCC 1016
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1008 GAGGGTACACGTAGAAGCTCCCTTGTTGGGGTCGGGTCAGGTATGCCTGTGGATGAATCC 1067
Query 1017 TCTTCACAAATGAAACTTATGCTTGAAGGAGGCCCACCTCG-GTTTCCCGCAAGCCCACC 1075
|||||||||||||||||||||||||||||||| |||||||| ||| || |||||||||||
Sbjct 1068 TCTTCACAAATGAAACTTATGCTTGAAGGAGGACCACCTCGAGTT-CCTGCAAGCCCACC 1126
Query 1076 TAGGTATACTGCAAGCCCACCTCATTATACCGCAAGCCCACCACGGTATCCTGCGAGCCC 1135
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1127 TAGGTATACCGCAAGCCCACCTCATTATACCGCAAGCCCACCACGGTATCCTGCAAGCCC 1186
Query 1136 ACCTCGGT 1143
||||||||
Sbjct 1187 ACCTCGGT 1194
Score = 113 bits (61), Expect = 3e-24
Identities = 67/70 (96%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 1119 CGGTATCCTGCGAGCCCACCTCGGTTTGCACAGTTTAATATCCAAGAGTTGTAATAAAAG 1178
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1191 CGGTATCCTGCGAGCCCACCTCGGTTTTCACAGTTTAATATCCAAGAGTTGTAATAAAAA 1250
Query 1179 CCGGATGGAG 1188
| ||||||||
Sbjct 1251 CTGGATGGAG 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58584036015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5