BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942798

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G32940.1 | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar pro...   169    1e-41


> AT4G32940.1 | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing 
enzyme | chr4:15900270-15903268 REVERSE LENGTH=1879
Length=1879

 Score =  169 bits (91),  Expect = 1e-41
 Identities = 137/159 (86%), Gaps = 3/159 (2%)
 Strand=Plus/Plus

Query  15   ATTATAATGGAGATGATGTCAATGTTGATAATCTATTTGTTATTCATCGGTGGAGACAAA  74
            |||||| |||||||||||||||||||||||||||||||| | |  |||  ||||||||||
Sbjct  502  ATTATACTGGAGATGATGTCAATGTTGATAATCTATTTGCTGTG-ATCCTTGGAGACAAA  560

Query  75   ACTGCTATCAAAAGTGAAAGTGGCAATGTTATGGATAGCGGTCCCAATGATCGTATCTTC  134
            |||||| | ||| | | |||||| || ||| ||||||| ||||| ||||||| |||||||
Sbjct  561  ACTGCTGTTAAAGGGGGAAGTGGGAAGGTTGTGGATAGTGGTCCTAATGATCATATCTTC  620

Query  135  ATATTTTACATTGACCATGGTGGTC-TAGGAGTTCTTGG  172
            ||||| |||| |||||||||||||| | |||||||||||
Sbjct  621  ATATTCTACAGTGACCATGGTGGTCCT-GGAGTTCTTGG  658



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9550872310


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5