BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942814
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10140.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 889 0.0
AT1G33490.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 433 1e-120
> AT4G10140.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING:
15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2062 (InterPro:IPR018639); BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G33490.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:6322457-6324664 FORWARD LENGTH=876
Length=876
Score = 889 bits (481), Expect = 0.0
Identities = 563/602 (94%), Gaps = 8/602 (1%)
Strand=Plus/Plus
Query 1 GTGAAGATTTTATAGATATCTTGATGGGTTTATCAAAAGGTAGATTAAAAGCATGGTTCA 60
||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTGAAGATTTTGTAGA-ATCGTGATGGGTTTATCAAAAGGTAGATTAAAAGCATGGTTCA 118
Query 61 ATAAGAAAATCACTGATCCTCTTCTCCAGATCTTGCGTAGAGGTACTGAGCCAAAGCAGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATAAGAAAATCACTGATCCTCTTCTCCAGATCTTGCGTAGAGGTACTGAGCCAAAGCAGC 178
Query 121 TTGCTTTCTCTGCCGCACTGGGTATTACTTTGGGGATATTTCCGATATGTGGTGTTCCTG 180
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 179 TTGCTTTCTCTGCTGCACTTGGTATTACCTTGGGGATATTTCCGATATGTGGTGTTCCTG 238
Query 181 TGTTTCTATGTGGAGTAGCTTTTGCGTTGCTCGGATC-TGCTTGTCATGCTCCAACTGTG 239
|||| |||||||||||||||||||| ||||||||||| | ||||||||||||| || ||
Sbjct 239 TGTTACTATGTGGAGTAGCTTTTGCCTTGCTCGGATCAT-CTTGTCATGCTCCGACCGTA 297
Query 240 ATGTTGGCTAATATCATTGCCACTCCAGTAGAACTAGCTCTCGTCGTGCCTTTCCTAAGA 299
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 298 ATGTTGGCTAATATCATTGCCACTCCAGTGGAACTAGCTCTCGTGGTTCCTTTCCTAAGA 357
Query 300 CTTGGTGAAAAAGTCACTGGTGGACCTCATTTTCCTTTGACATCAGATGCTCTAAAGAAG 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTTGGTGAAAAAGTTACTGGTGGACCTCATTTTCCTTTGACATCAGATGCTCTAAAGAAG 417
Query 360 GTTTTCACTGGTCAAGCCTCTCAGGAAGTCTTTTTAAGCATTGGTAATGCGTTACTAGGG 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 418 GTTTTCACTGGTCAAGCCTCTCAAGAAGTCTTTTTAAGCATTGGTAATGCGTTACTAGGG 477
Query 420 TGGCTCGTAGCAACTCCATTTTTCTTTATTACGTTATATGTTGTGTTGCTGCCATGTTTC 479
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 478 TGGCTCGTAGCAACTCCATTTTTCTTTATTACGTTATACGTTGTATTGCTGCCATGTTTC 537
Query 480 AAAATCCTCGTCCGCAAATTTGGCGCCGGTAATTCGACCCCA-AAGTTACCTACTACAAG 538
| |||||| |||||||| || |||| || | ||| |||| | ||| ||||||| | | |
Sbjct 538 ACAATCCTGGTCCGCAAGTTCGGCGGCGTTGCTTCAACCC-AGAAGCTACCTAC-A-A-G 593
Query 539 TATGGAGACAGAGCTCAACCCAAAGCCTAGAGATGCTTAAATTCAACAACACTTAGAAAC 598
||||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 594 TATGGAGACGGAGCTCAACCCAAAGCCAAGAGACGCTTAAATTCAACAAGACTTAGAAAC 653
Query 599 CT 600
||
Sbjct 654 CT 655
> AT1G33490.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2062 (InterPro:IPR018639);
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT4G10140.1); Has 88 Blast hits to 88 proteins
in 29 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi
- 0; Plants - 54; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink). | chr1:12150690-12152394 REVERSE LENGTH=897
Length=897
Score = 433 bits (234), Expect = 1e-120
Identities = 427/520 (82%), Gaps = 13/520 (3%)
Strand=Plus/Plus
Query 19 TCTTGATGG-GTTTATCAAAAGGTAGATTAAAAGCATGGTTCAATAAGAAAATCACTGAT 77
|||| |||| | || || ||||||||||| |||| |||||| ||||||| |||| |||
Sbjct 115 TCTT-ATGGCGATT-TCGAAAGGTAGATTGAAAGTTTGGTTCGATAAGAAGATCAGTGAA 172
Query 78 CCTCTTCTCCAGATCTTGCGTAGAGGTACTGAGCCAAAGCAGCTTGCTTTCTCTGCCGCA 137
|| ||| ||||||||||||| |||||| |||||||||||||||| ||||| ||||| |||
Sbjct 173 CCACTTATCCAGATCTTGCGCAGAGGTGCTGAGCCAAAGCAGCTGGCTTTTTCTGCGGCA 232
Query 138 CTGGGTATTACTTTGGGGA-TATTTCCGATATGTGGTGTTCCTGTGTTTCTATGTGGAGT 196
|||||||||| | |||| ||||||| || ||||||||| | ||||| |||||||||||
Sbjct 233 TTGGGTATTACCAT-GGGAGTATTTCCAATCTGTGGTGTTACGGTGTTACTATGTGGAGT 291
Query 197 AGCTTTTGCGTTGCTCGGATCTGC-TTGTCATGCTCCAACTGTGATGTTGGCTAA-TATC 254
||| |||||| ||| |||||| | |||||||||||||||||||||||||||||| | ||
Sbjct 292 GGCTATTGCGTCGCTTGGATCT-CTTTGTCATGCTCCAACTGTGATGTTGGCTAACT-TC 349
Query 255 ATTGCCACTCCAGTAGAACT-AGCTCTCGTCGTGCCTTTCCTAAGACTTGGTGAAAAAGT 313
||||| |||||| ||||||| || ||| || ||||||||| || ||||||| |||||| |
Sbjct 350 ATTGCTACTCCAATAGAACTAAG-TCTTGTGGTGCCTTTCTTACGACTTGGCGAAAAAAT 408
Query 314 CACTGGTGGACCTCATTTTCCTTTGACATCAGATGCTCTAAAGAAGGTTTTCACTGGTCA 373
|| |||||||||||||||||||| ||||| ||||| ||||||||||||||||| || ||
Sbjct 409 AACCGGTGGACCTCATTTTCCTTTAACATCTGATGCCCTAAAGAAGGTTTTCACAGGCCA 468
Query 374 AGCCTCTC-AGGAAGTCTTTTTAAGCATTGGTAATGCGTTACTAGGGTGGCTCGTAGCAA 432
||| || | || | || |||||||||||||| |||||| ||||||| |||||| ||||
Sbjct 469 AGCTTCCCGAG-ATGTTTTTTTAAGCATTGGAAATGCGCTACTAGGATGGCTCATAGCGG 527
Query 433 CTCCATTTTTCTTTATTACGTTATATGTTGTGTTGCTGCCATGTTTCAAAATCCTCGTCC 492
| |||||| | | || | |||| | |||| || |||||||||||||| || ||||
Sbjct 528 CACCATTTGTGATCGTTGCACTATACATCATGTTTCTCCCATGTTTCAAAATACTTGTCC 587
Query 493 GCAAATTTGGCGCCGGTAATTCGACCCCAAAGTTACCTAC 532
||||||| || | | | |||| ||| ||||| ||||||
Sbjct 588 GCAAATTCAGCTCTGTTGATTCAACCGCAAAGACACCTAC 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5