BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942825 Length=1108 Score E Sequences producing significant alignments: (Bits) Value AT4G10190.1 | Symbols: | F-box and associated interaction doma... 913 0.0 AT4G10201.1 | Symbols: | Pseudogene of AT3G21130; F-box family... 307 1e-82 AT3G21170.1 | Symbols: | F-box and associated interaction doma... 167 2e-40 > AT4G10190.1 | Symbols: | F-box and associated interaction domains-containing protein | chr4:6350928-6352031 FORWARD LENGTH=1104 Length=1104 Score = 913 bits (494), Expect = 0.0 Identities = 719/823 (87%), Gaps = 33/823 (4%) Strand=Plus/Plus Query 262 AAGATTGATATTTGCAAAGTCTTTCATTGCGACGGCTTATTGCTATGCACCACCATAGAC 321 ||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||| Sbjct 299 AAG-TTGATATATGCAACGTCTTTCATTGCGACGGCTTCTTGCTATGCACCACCGTAGAC 357 Query 322 AATAGACTAGTTGTTTCGAATCCGTGTTCAT-GTGAAATTAAGTGGATCCAACCAAGAAA 380 |||||||| |||||||||||||| ||||| | |||| | ||||||||||||||||||||| Sbjct 358 AATAGACTCGTTGTTTCGAATCCCTGTTC-TCGTGATACTAAGTGGATCCAACCAAGAAA 416 Query 381 TTCCTACAAGAAATTCGATATCTATGCTTTCGGTAAATCCTCATGCAACAAGTACAAAAT 440 || |||||||||||||||||| | |||| |||||||||| |||||||||||||||||||| Sbjct 417 TTTCTACAAGAAATTCGATATATTTGCTCTCGGTAAATCATCATGCAACAAGTACAAAAT 476 Query 441 CTTGAGGATGGATCAATTTGATTAT-ACTAGCCCAGTA-TTACTTG-ACTACGAAATCTA 497 | ||||||||||||||||| || | | ||| |||| | ||| || ||||||||||||| Sbjct 477 CATGAGGATGGATCAATTTTATCCTGA-TAGGCCAGAATTTA--TGAACTACGAAATCTA 533 Query 498 TGACTTTAACTCTAATTCTTGGAGAGTTATTGGTAAGATAATTAGGGAATGGTTCATACC 557 |||||||||||||||||| ||||||||| |||||||| |||| || ||||||||||| Sbjct 534 TGACTTTAACTCTAATTCGTGGAGAGTTGTTGGTAAG---ATTACAGACTGGTTCATACC 590 Query 558 GCGGTGTACGGACCGCGGCATGTCTGTTAATGGAAACACTTACTGGCTTGCTTCTACTAA 617 |||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 591 AAGGTGTATGGACCGTGGCATGTCTGTGAATGGAAACACTTACTGGCTTGCTTCTACTAA 650 Query 618 C---GACTTCACAAGTGGGCA-TTTTAAACTTGGTTTTGATTTTTCAACAGAGAGTTTTG 673 ||||| || ||| | | |||| ||||||||||||||||||||| ||||| |||| Sbjct 651 TAAAGACTTGACCAGTAGT-AGTTTTTTACTTGGTTTTGATTTTTCAACGGAGAGATTTG 709 Query 674 CAAGGGTATCTCTTCCGGGTGATCATCT-TCCTGATCGTATTTTTGCTTTATCAGTTACT 732 |||||| |||||||||||||||||||| || ||||| | ||||||||||| |||||||| Sbjct 710 TAAGGGTGTCTCTTCCGGGTGATCATCTCTC-TGATCCTGTTTTTGCTTTAGCAGTTACT 768 Query 733 AGAGAAGATCCAAAAATTTGTATAGCTACTCGGAGCATCATTCAAGAACTCCATATAGAT 792 ||||||||||||||||| ||| | |||| || | | | || ||||||||||||||| Sbjct 769 AGAGAAGATCCAAAAATATGTGTTGCTA-TC--A---T--T-CAGGAACTCCATATAGAT 819 Query 793 GTATGGATTGCAACTACGATTGAGAGTACGGGAGCTGCGTCATGGAGAAAATTCCTATCA 852 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 820 GTATGGATTGCAACTACGATTGAGAGTACGGGAGCTGCGTCATGGAGCAAGTTCCTATCA 879 Query 853 GTT-AATTTAGCAAATCTCTACAAGCCTTTTTGCTTTGCTAGTGGGATGAATTTCTTGGT 911 ||| |||| ||||||||||||| ||| | ||||||| | |||| |||||||||||||||| Sbjct 880 GTTGAATT-AGCAAATCTCTACGAGCGTATTTGCTTGGATAGTTGGATGAATTTCTTGGT 938 Query 912 CGACCAGGAGAACAAAGTTTTGGTGTGTCGCG--G-TAAATATTGGGTCTCTGACGTTTT 968 ||||||| |||||||||||||||||| ||| | | ||| |||||| |||| | ||||| Sbjct 939 CGACCAGAAGAACAAAGTTTTGGTGTATCGTGATGGTAACTATTGGATCTCCAATGTTTT 998 Query 969 CTTACACGTTGTGGGAAAGGATAAATGTATACAAGTGGATCATCATGATGCAGAATCTCG 1028 ||| |||||||||||| |||||||||||||||||||||||||||||||| ||| ||| | Sbjct 999 CTTGCACGTTGTGGGAGAGGATAAATGTATACAAGTGGATCATCATGATTCAGTGTCTAG 1058 Query 1029 ATGCTCACTTGTCGACAATTATGTTCCAACTTTGGTTCAAATC 1071 |||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1059 ATGCTCACTTGTCGTCAATTATGTTCCAACTTTGGTTCATATC 1101 Score = 278 bits (150), Expect = 1e-73 Identities = 216/247 (87%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 22 ATGAAGAAGAGAAACAGAATAGATCTTCCCGAGGATTTGGTAGTGGAGATACTCTCTAGG 81 |||| ||||||||||| | ||||||||||||||||||||||| ||||||||||| | ||| Sbjct 1 ATGACGAAGAGAAACATAGTAGATCTTCCCGAGGATTTGGTAATGGAGATACTCGCGAGG 60 Query 82 GTTCCG-GCGGAATCTTTGGTACGATTACGAA-CTACATCCAAAAGATGGAACGTTCTGA 139 |||||| || || ||||||| ||||||| || ||||||||||||||||||||||||||| Sbjct 61 GTTCCGACCGTAA-CTTTGGTCCGATTAC-AATCTACATCCAAAAGATGGAACGTTCTGA 118 Query 140 TCAAAGATGGGAGATTTGCTAAGAAACACTATGCTAATGCACCAAGGCACTCTCTGATTA 199 || ||||| |||||||||| || | |||| | ||||||||||||||||||||||| ||| Sbjct 119 TCGAAGATAAGAGATTTGCTGAGCAGCACTTTACTAATGCACCAAGGCACTCTCTGCTTA 178 Query 200 TCATGTTGATTG-CTTTTAGGGTTTATCTGGTGAGCGTCGATCTCCATGAGA-TTAACAA 257 |||||||||| | | |||||||||||||| |||||||||||||| ||| | | || |||| Sbjct 179 TCATGTTGAT-GACCTTTAGGGTTTATCTCGTGAGCGTCGATCTTCAT-ACAATTCACAA 236 Query 258 CAACAAG 264 ||||||| Sbjct 237 CAACAAG 243 > AT4G10201.1 | Symbols: | Pseudogene of AT3G21130; F-box family protein-related | chr4:6355739-6368550 FORWARD LENGTH=699 Length=699 Score = 307 bits (166), Expect = 1e-82 Identities = 475/612 (78%), Gaps = 69/612 (11%) Strand=Plus/Plus Query 490 GAAATCTATGACTTTAACTCTAATTCTTGGAGAGTTATTGGTAAGATA-ATTAGGGAATG 548 ||||| |||||||||| | ||||||| |||||| || ||||| || | | ||| || || Sbjct 127 GAAATATATGACTTTACCCCTAATTCGTGGAGATTTGTTGGT--GA-AGA-TAGCGACTG 182 Query 549 GTTCATACCGCGGTGTACGG-----ACCGC--GGCATGTCTGTTAATGGAAACACTTACT 601 ||||||||| ||| |||| | || | ||||||||| |||||||| ||||||| Sbjct 183 GTTCATACCACGGACCACGGTTAAAAGAGCATGTCATGTCTGTAAATGGAAATACTTACT 242 Query 602 GGCTTGCTT-CTAC-TAACGAC-TTCACAAGT-GGGCATT-TTAAACTTGGTTTTGATTT 656 ||||||||| | || || ||| | | |||| ||| ||| || |||| |||| ||||| Sbjct 243 GGCTTGCTTGC-ACGCAA-GACATAGA-AAGTGGGGAATTCTT--ACTTTGTTTGGATTT 297 Query 657 TTCAACAGAGAGTTTTGCAAGGGTATCTCTTCCGGGTGATCAT-CTTCCTGATCGT-AT- 713 ||||| |||||| ||| |||| || ||||| |||||||||||| ||| | ||| | || Sbjct 298 TTCAATAGAGAGATTTACAAGTGTGTCTCTCCCGGGTGATCATCCTT-TTTATCATCATC 356 Query 714 -TTTTGCTTTATCAGTTACTAGAGAAGATCCAAAAAT-TTGTA---TAGCTACTCG-GAG 767 | | |||||||||| |||||||||||| ||||||| ||||| |||||||||| | | Sbjct 357 CTATCACTTTATCAGTGACTAGAGAAGAT-CAAAAATGTTGTATGTTAGCTACTCGTG-G 414 Query 768 CAT-C-A-TTCAAGA-ACTCCATATA-GATGTATGGATTGCAACTACGATTGA-GAGTAC 821 ||| | | | || | | || || ||||| |||||||||||| |||||| | |||| Sbjct 415 CATGCGAGTAGGCGATA-TAGATGTATCATGTAGGGATTGCAACTAAGATTGACG-GTAC 472 Query 822 GGGAGCTGCGTCATGGAGAAAATTCCTATCAGTTAATTTAGCAAATCTCTACAAGCCTTT 881 ||||| ||||||||||| | | || | | ||||||||||||| Sbjct 473 CGGAGCCGCGTCATGGAG---A-----A--AG------T------T-TCTACAAGCCTTT 509 Query 882 TTGCTTTGCTAGTGGGATGAATTTCTTGGTCGACCAGGAGAACAAAGTTTTGGTGTGTCG 941 ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 510 TTGGTTTGCTAGTGGGATAAATTT-TTGGTCGACCAGGAGAACAAAGTTTTGGTGTGTCG 568 Query 942 CGGTAAATATTGGGTCTCTGACGTTTTCTTACACGTTGTGGGA-AAGGATAAATGTATAC 1000 ||||| || ||||||| ||||||| ||||||||||||||| ||| |||||||||||| Sbjct 569 TGGTAAGCATGGGGTCTCCAACGTTTTTTTACACGTTGTGGGAGAAG-ATAAATGTATAC 627 Query 1001 AAGTGGATCATCATGATGCAGAATCTCGATGCTCACTTGTCGA-CAATTATGTTCCAACT 1059 || |||||||| |||| | |||||||| ||| |||||| | | || |||||||||||| Sbjct 628 AATTGGATCATGATGAGGAAGAATCTCAATGGTCACTTCTTAATCAGTTATGTTCCAACG 687 Query 1060 TTGGTTCAAATC 1071 |||||||||||| Sbjct 688 TTGGTTCAAATC 699 > AT3G21170.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:7419976-7421160 FORWARD LENGTH=1185 Length=1185 Score = 167 bits (90), Expect = 2e-40 Identities = 153/183 (84%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 46 CTTCCCGAGGATTTGGTAGTGGAGATACTCTCTAGGGTTCCGGCGGAATCTT-TGGTACG 104 ||||| ||||||||||||||||||||||||||||| |||||||| | || || | | ||| Sbjct 16 CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGAGTTCCGGCTGTAT-TTCTAGCACG 74 Query 105 ATTACGAACTACATCCAAAAGATGGAACG-TTCTGATCAAAGATGGGAGA-TTTGCTAAG 162 ||||||| | ||||||||| |||||||| || ||||||||||||||| | ||| ||||| Sbjct 75 ATTACGATCAACATCCAAACGATGGAACACTT-TGATCAAAGATGGGAAACTTT-CTAAG 132 Query 163 AAACACTATGCTAATGCACCAAGGCACTCTCTGATTATCATGTTGATTGCTTTTAGGGTT 222 || |||| | ||||||| |||||||||||| || | || ||||||||| | || |||| Sbjct 133 AAGCACTCTTCTAATGCTCCAAGGCACTCTATGGCTCTCGTGTTGATTGATCATAAGGTT 192 Query 223 TAT 225 ||| Sbjct 193 TAT 195 Score = 67.6 bits (36), Expect = 2e-10 Identities = 43/46 (93%), Gaps = 2/46 (4%) Strand=Plus/Plus Query 487 TACGAAATCTATGACTTTAACTCTAATTCTTGGAG-AGTTATTGGT 531 ||||||||||||||||||||||||||||| ||||| ||| |||||| Sbjct 580 TACGAAATCTATGACTTTAACTCTAATTCGTGGAGGAGT-ATTGGT 624 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54316989690 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5