BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942825
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10190.1 | Symbols: | F-box and associated interaction doma... 913 0.0
AT4G10201.1 | Symbols: | Pseudogene of AT3G21130; F-box family... 307 1e-82
AT3G21170.1 | Symbols: | F-box and associated interaction doma... 167 2e-40
> AT4G10190.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:6350928-6352031 FORWARD LENGTH=1104
Length=1104
Score = 913 bits (494), Expect = 0.0
Identities = 719/823 (87%), Gaps = 33/823 (4%)
Strand=Plus/Plus
Query 262 AAGATTGATATTTGCAAAGTCTTTCATTGCGACGGCTTATTGCTATGCACCACCATAGAC 321
||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||
Sbjct 299 AAG-TTGATATATGCAACGTCTTTCATTGCGACGGCTTCTTGCTATGCACCACCGTAGAC 357
Query 322 AATAGACTAGTTGTTTCGAATCCGTGTTCAT-GTGAAATTAAGTGGATCCAACCAAGAAA 380
|||||||| |||||||||||||| ||||| | |||| | |||||||||||||||||||||
Sbjct 358 AATAGACTCGTTGTTTCGAATCCCTGTTC-TCGTGATACTAAGTGGATCCAACCAAGAAA 416
Query 381 TTCCTACAAGAAATTCGATATCTATGCTTTCGGTAAATCCTCATGCAACAAGTACAAAAT 440
|| |||||||||||||||||| | |||| |||||||||| ||||||||||||||||||||
Sbjct 417 TTTCTACAAGAAATTCGATATATTTGCTCTCGGTAAATCATCATGCAACAAGTACAAAAT 476
Query 441 CTTGAGGATGGATCAATTTGATTAT-ACTAGCCCAGTA-TTACTTG-ACTACGAAATCTA 497
| ||||||||||||||||| || | | ||| |||| | ||| || |||||||||||||
Sbjct 477 CATGAGGATGGATCAATTTTATCCTGA-TAGGCCAGAATTTA--TGAACTACGAAATCTA 533
Query 498 TGACTTTAACTCTAATTCTTGGAGAGTTATTGGTAAGATAATTAGGGAATGGTTCATACC 557
|||||||||||||||||| ||||||||| |||||||| |||| || |||||||||||
Sbjct 534 TGACTTTAACTCTAATTCGTGGAGAGTTGTTGGTAAG---ATTACAGACTGGTTCATACC 590
Query 558 GCGGTGTACGGACCGCGGCATGTCTGTTAATGGAAACACTTACTGGCTTGCTTCTACTAA 617
|||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 591 AAGGTGTATGGACCGTGGCATGTCTGTGAATGGAAACACTTACTGGCTTGCTTCTACTAA 650
Query 618 C---GACTTCACAAGTGGGCA-TTTTAAACTTGGTTTTGATTTTTCAACAGAGAGTTTTG 673
||||| || ||| | | |||| ||||||||||||||||||||| ||||| ||||
Sbjct 651 TAAAGACTTGACCAGTAGT-AGTTTTTTACTTGGTTTTGATTTTTCAACGGAGAGATTTG 709
Query 674 CAAGGGTATCTCTTCCGGGTGATCATCT-TCCTGATCGTATTTTTGCTTTATCAGTTACT 732
|||||| |||||||||||||||||||| || ||||| | ||||||||||| ||||||||
Sbjct 710 TAAGGGTGTCTCTTCCGGGTGATCATCTCTC-TGATCCTGTTTTTGCTTTAGCAGTTACT 768
Query 733 AGAGAAGATCCAAAAATTTGTATAGCTACTCGGAGCATCATTCAAGAACTCCATATAGAT 792
||||||||||||||||| ||| | |||| || | | | || |||||||||||||||
Sbjct 769 AGAGAAGATCCAAAAATATGTGTTGCTA-TC--A---T--T-CAGGAACTCCATATAGAT 819
Query 793 GTATGGATTGCAACTACGATTGAGAGTACGGGAGCTGCGTCATGGAGAAAATTCCTATCA 852
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 820 GTATGGATTGCAACTACGATTGAGAGTACGGGAGCTGCGTCATGGAGCAAGTTCCTATCA 879
Query 853 GTT-AATTTAGCAAATCTCTACAAGCCTTTTTGCTTTGCTAGTGGGATGAATTTCTTGGT 911
||| |||| ||||||||||||| ||| | ||||||| | |||| ||||||||||||||||
Sbjct 880 GTTGAATT-AGCAAATCTCTACGAGCGTATTTGCTTGGATAGTTGGATGAATTTCTTGGT 938
Query 912 CGACCAGGAGAACAAAGTTTTGGTGTGTCGCG--G-TAAATATTGGGTCTCTGACGTTTT 968
||||||| |||||||||||||||||| ||| | | ||| |||||| |||| | |||||
Sbjct 939 CGACCAGAAGAACAAAGTTTTGGTGTATCGTGATGGTAACTATTGGATCTCCAATGTTTT 998
Query 969 CTTACACGTTGTGGGAAAGGATAAATGTATACAAGTGGATCATCATGATGCAGAATCTCG 1028
||| |||||||||||| |||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 999 CTTGCACGTTGTGGGAGAGGATAAATGTATACAAGTGGATCATCATGATTCAGTGTCTAG 1058
Query 1029 ATGCTCACTTGTCGACAATTATGTTCCAACTTTGGTTCAAATC 1071
|||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1059 ATGCTCACTTGTCGTCAATTATGTTCCAACTTTGGTTCATATC 1101
Score = 278 bits (150), Expect = 1e-73
Identities = 216/247 (87%), Gaps = 8/247 (3%)
Strand=Plus/Plus
Query 22 ATGAAGAAGAGAAACAGAATAGATCTTCCCGAGGATTTGGTAGTGGAGATACTCTCTAGG 81
|||| ||||||||||| | ||||||||||||||||||||||| ||||||||||| | |||
Sbjct 1 ATGACGAAGAGAAACATAGTAGATCTTCCCGAGGATTTGGTAATGGAGATACTCGCGAGG 60
Query 82 GTTCCG-GCGGAATCTTTGGTACGATTACGAA-CTACATCCAAAAGATGGAACGTTCTGA 139
|||||| || || ||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct 61 GTTCCGACCGTAA-CTTTGGTCCGATTAC-AATCTACATCCAAAAGATGGAACGTTCTGA 118
Query 140 TCAAAGATGGGAGATTTGCTAAGAAACACTATGCTAATGCACCAAGGCACTCTCTGATTA 199
|| ||||| |||||||||| || | |||| | ||||||||||||||||||||||| |||
Sbjct 119 TCGAAGATAAGAGATTTGCTGAGCAGCACTTTACTAATGCACCAAGGCACTCTCTGCTTA 178
Query 200 TCATGTTGATTG-CTTTTAGGGTTTATCTGGTGAGCGTCGATCTCCATGAGA-TTAACAA 257
|||||||||| | | |||||||||||||| |||||||||||||| ||| | | || ||||
Sbjct 179 TCATGTTGAT-GACCTTTAGGGTTTATCTCGTGAGCGTCGATCTTCAT-ACAATTCACAA 236
Query 258 CAACAAG 264
|||||||
Sbjct 237 CAACAAG 243
> AT4G10201.1 | Symbols: | Pseudogene of AT3G21130; F-box family
protein-related | chr4:6355739-6368550 FORWARD LENGTH=699
Length=699
Score = 307 bits (166), Expect = 1e-82
Identities = 475/612 (78%), Gaps = 69/612 (11%)
Strand=Plus/Plus
Query 490 GAAATCTATGACTTTAACTCTAATTCTTGGAGAGTTATTGGTAAGATA-ATTAGGGAATG 548
||||| |||||||||| | ||||||| |||||| || ||||| || | | ||| || ||
Sbjct 127 GAAATATATGACTTTACCCCTAATTCGTGGAGATTTGTTGGT--GA-AGA-TAGCGACTG 182
Query 549 GTTCATACCGCGGTGTACGG-----ACCGC--GGCATGTCTGTTAATGGAAACACTTACT 601
||||||||| ||| |||| | || | ||||||||| |||||||| |||||||
Sbjct 183 GTTCATACCACGGACCACGGTTAAAAGAGCATGTCATGTCTGTAAATGGAAATACTTACT 242
Query 602 GGCTTGCTT-CTAC-TAACGAC-TTCACAAGT-GGGCATT-TTAAACTTGGTTTTGATTT 656
||||||||| | || || ||| | | |||| ||| ||| || |||| |||| |||||
Sbjct 243 GGCTTGCTTGC-ACGCAA-GACATAGA-AAGTGGGGAATTCTT--ACTTTGTTTGGATTT 297
Query 657 TTCAACAGAGAGTTTTGCAAGGGTATCTCTTCCGGGTGATCAT-CTTCCTGATCGT-AT- 713
||||| |||||| ||| |||| || ||||| |||||||||||| ||| | ||| | ||
Sbjct 298 TTCAATAGAGAGATTTACAAGTGTGTCTCTCCCGGGTGATCATCCTT-TTTATCATCATC 356
Query 714 -TTTTGCTTTATCAGTTACTAGAGAAGATCCAAAAAT-TTGTA---TAGCTACTCG-GAG 767
| | |||||||||| |||||||||||| ||||||| ||||| |||||||||| | |
Sbjct 357 CTATCACTTTATCAGTGACTAGAGAAGAT-CAAAAATGTTGTATGTTAGCTACTCGTG-G 414
Query 768 CAT-C-A-TTCAAGA-ACTCCATATA-GATGTATGGATTGCAACTACGATTGA-GAGTAC 821
||| | | | || | | || || ||||| |||||||||||| |||||| | ||||
Sbjct 415 CATGCGAGTAGGCGATA-TAGATGTATCATGTAGGGATTGCAACTAAGATTGACG-GTAC 472
Query 822 GGGAGCTGCGTCATGGAGAAAATTCCTATCAGTTAATTTAGCAAATCTCTACAAGCCTTT 881
||||| ||||||||||| | | || | | |||||||||||||
Sbjct 473 CGGAGCCGCGTCATGGAG---A-----A--AG------T------T-TCTACAAGCCTTT 509
Query 882 TTGCTTTGCTAGTGGGATGAATTTCTTGGTCGACCAGGAGAACAAAGTTTTGGTGTGTCG 941
||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 510 TTGGTTTGCTAGTGGGATAAATTT-TTGGTCGACCAGGAGAACAAAGTTTTGGTGTGTCG 568
Query 942 CGGTAAATATTGGGTCTCTGACGTTTTCTTACACGTTGTGGGA-AAGGATAAATGTATAC 1000
||||| || ||||||| ||||||| ||||||||||||||| ||| ||||||||||||
Sbjct 569 TGGTAAGCATGGGGTCTCCAACGTTTTTTTACACGTTGTGGGAGAAG-ATAAATGTATAC 627
Query 1001 AAGTGGATCATCATGATGCAGAATCTCGATGCTCACTTGTCGA-CAATTATGTTCCAACT 1059
|| |||||||| |||| | |||||||| ||| |||||| | | || ||||||||||||
Sbjct 628 AATTGGATCATGATGAGGAAGAATCTCAATGGTCACTTCTTAATCAGTTATGTTCCAACG 687
Query 1060 TTGGTTCAAATC 1071
||||||||||||
Sbjct 688 TTGGTTCAAATC 699
> AT3G21170.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7419976-7421160 FORWARD LENGTH=1185
Length=1185
Score = 167 bits (90), Expect = 2e-40
Identities = 153/183 (84%), Gaps = 6/183 (3%)
Strand=Plus/Plus
Query 46 CTTCCCGAGGATTTGGTAGTGGAGATACTCTCTAGGGTTCCGGCGGAATCTT-TGGTACG 104
||||| ||||||||||||||||||||||||||||| |||||||| | || || | | |||
Sbjct 16 CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGAGTTCCGGCTGTAT-TTCTAGCACG 74
Query 105 ATTACGAACTACATCCAAAAGATGGAACG-TTCTGATCAAAGATGGGAGA-TTTGCTAAG 162
||||||| | ||||||||| |||||||| || ||||||||||||||| | ||| |||||
Sbjct 75 ATTACGATCAACATCCAAACGATGGAACACTT-TGATCAAAGATGGGAAACTTT-CTAAG 132
Query 163 AAACACTATGCTAATGCACCAAGGCACTCTCTGATTATCATGTTGATTGCTTTTAGGGTT 222
|| |||| | ||||||| |||||||||||| || | || ||||||||| | || ||||
Sbjct 133 AAGCACTCTTCTAATGCTCCAAGGCACTCTATGGCTCTCGTGTTGATTGATCATAAGGTT 192
Query 223 TAT 225
|||
Sbjct 193 TAT 195
Score = 67.6 bits (36), Expect = 2e-10
Identities = 43/46 (93%), Gaps = 2/46 (4%)
Strand=Plus/Plus
Query 487 TACGAAATCTATGACTTTAACTCTAATTCTTGGAG-AGTTATTGGT 531
||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 580 TACGAAATCTATGACTTTAACTCTAATTCGTGGAGGAGT-ATTGGT 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5