BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942831

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10265.1 | Symbols:  | Wound-responsive family protein | chr...   387    4e-107


> AT4G10265.1 | Symbols:  | Wound-responsive family protein | chr4:6373097-6373536 
REVERSE LENGTH=440
Length=440

 Score =  387 bits (209),  Expect = 4e-107
 Identities = 272/301 (90%), Gaps = 9/301 (3%)
 Strand=Plus/Plus

Query  4    AAACAAGACAGAAAC--A-A-AAATGAGTTCTGCAAGCAAAACATGGATGGTGGCTGCAA  59
            |||||||| ||||||  | | ||||||| |||||||||||||| |||||||| |||||||
Sbjct  37   AAACAAGAAAGAAACAAAGAGAAATGAGCTCTGCAAGCAAAACGTGGATGGTTGCTGCAA  96

Query  60   GCATCGGAGCCGTTGAGGCATTAAAAGACCAACTAGGCGTGTGTCGTTGGAACTATGTAA  119
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct  97   GCATCGGAGCCGTTGAGGCATTGAAAGACCAACTAGGCGTGTGTCGTTGGAACTACGTGA  156

Query  120  TCCGATCAGCGAATCAGTATCTCCGAAACAACTTAAGATCTGTTTCTG-AAGCTAAGAAG  178
            ||||||| |||||||||||||| || |||||||||||||| || || | |||||||||||
Sbjct  157  TCCGATCTGCGAATCAGTATCTACGCAACAACTTAAGATCCGTGTC-GCAAGCTAAGAAG  215

Query  179  CTCTCTTCCTCATCATTCGATTATACCAACAAGACCAAGCAAGCTGAAGAATCGTTAAGG  238
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct  216  CTCTCTTCCTCATCAATCGATTATACCAACAAGACCAAGCAAGCTGAAGAATCGCTGAGG  275

Query  239  ACAGTCATGTACTTGAGTTGTTGGGGTCCTAGTTAATGAAAAA-GGATCAAGATTTGAAA  297
            ||||||||||||||||| |||||||||||||||||||| | || |||    |||||||||
Sbjct  276  ACAGTCATGTACTTGAGCTGTTGGGGTCCTAGTTAATGGACAATGGAGG--GATTTGAAA  333

Query  298  A  298
            |
Sbjct  334  A  334



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13873898724


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5