BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942835

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10280.1 | Symbols:  | RmlC-like cupins superfamily protein ...   654    0.0  


> AT4G10280.1 | Symbols:  | RmlC-like cupins superfamily protein 
| chr4:6375125-6376111 REVERSE LENGTH=633
Length=633

 Score =  654 bits (354),  Expect = 0.0
 Identities = 418/449 (93%), Gaps = 4/449 (1%)
 Strand=Plus/Plus

Query  3    AAAGTTGTGAAATTCCAAATGGGTAATCATTTTCTAACTTTGTCTCTGCTTCTCGTAACA  62
            |||||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct  98   AAAGTTGTGAAAATCCAAATGGGTAATCATTTTTTAACGTTATCTCTGCTTCTCGTAACA  157

Query  63   GTCTGCGTTTGCGTTTCCTTCATCACCACGAAGCTAAACCCTAAAGAAGCAATTC-TATC  121
            ||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct  158  GTCTGCGTTTGCGTTTCTTTCATCACCACGAAGCTAAACCCTAAAGAAGCAA-TCGTATC  216

Query  122  TGTCTCCTCCGATTCTGAGATTCCTACTGAAATTCACGGAGTCAAAATCATGCGTCAAGC  181
            |||||| ||||||||||||||||||||||||||||| || ||||| ||| ||||||||||
Sbjct  217  TGTCTCTTCCGATTCTGAGATTCCTACTGAAATTCATGGTGTCAAGATCTTGCGTCAAGC  276

Query  182  TTCTA-ATACCAAACTTGCTCAACTAGGCGTAGCTTCTTGGCCCAAGTGGGAAGGTGCTC  240
            ||| | ||||||||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct  277  TTC-AGATACCAAACTTGCTCAATTAGGCGTTGCCTCTTGGCCCAAGTGGGAAGGTGCTC  335

Query  241  CAAGCAAGTTTCCATGGGAGTTTAAGAAGACGGAAACGATGTATTTCATGGAAGGGAAAG  300
            ||||||||||||||||||||||||||||||| || || || |||||||||||||||||||
Sbjct  336  CAAGCAAGTTTCCATGGGAGTTTAAGAAGACAGAGACAATATATTTCATGGAAGGGAAAG  395

Query  301  TGAAAGTGAATGTTGATGGATTCGACGAAGAAGAAGAAACATTCGAGATAGGGAAAGGAG  360
            ||||||||||||| || |||| |||||||||||||||||| || ||||||||||||||||
Sbjct  396  TGAAAGTGAATGTAGACGGATACGACGAAGAAGAAGAAACCTTTGAGATAGGGAAAGGAG  455

Query  361  ATGTTGTTGTTTTCCTTAAAGATATGAAAGTGGTTTGGGAGATAACTGAGGCTGTGAAGA  420
            ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  456  ATGTTGTTGTTTTCCCTAAAGATATGAAAGTTGTTTGGGAGATAACTGAAGCTGTGAAGA  515

Query  421  AACATTATAGCTTAGAGGAGTAGTGACTT  449
            | || ||||||||||||||||||||||||
Sbjct  516  AGCAATATAGCTTAGAGGAGTAGTGACTT  544



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22067541811


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5