BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942849
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10360.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensi... 1303 0.0
> AT4G10360.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
domain containing protein | chr4:6420455-6422299 FORWARD
LENGTH=1090
Length=1090
Score = 1303 bits (705), Expect = 0.0
Identities = 800/846 (95%), Gaps = 6/846 (1%)
Strand=Plus/Plus
Query 1 TCAAAGCAAGAATCTTTAAAATGACGACCGGTTTTGATGATGCTTTCGTTTCTTCAAGAC 60
|||||| ||||| |||||||||||| |||| || |||||||| |||||||||||||||||
Sbjct 79 TCAAAGGAAGAAACTTTAAAATGACAACCGATTCTGATGATGGTTTCGTTTCTTCAAGAC 138
Query 61 AACTCCTTTTGCTTGCTTCGATTTGTTTC-GGTGCTCTCATGTGCAAAATCGTTTATGAC 119
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 139 AACTCCTTTTGCTTGCTTCGATTTG-TTCTGGTGCTCTCATGTGCAAAATCGTTTATGAC 197
Query 120 TTGACTCGTTTCATAAGTCCATTGTTCTTCAGTGTTTATGGAAAACTCAACAGCAAAGTT 179
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 198 TTGACTCGTTTCATAAGTCCATTGCTCTTCAGTGTTTATGGAAAACTTGACAGCAAAGTT 257
Query 180 CA-AATGGAATGGAACAATAGGGGATTCTCAACTTTCCATGCTGTTTTTACTTCTGTGGC 238
| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 258 -AGAATGGAATGGAACAATAGGGGATTCTCAACTTTTCATGCTGTGTTTACTTCTGTGGC 316
Query 239 TTCAATTTACTTCTTGGTGATATCTGATCAATTTGATGAGAATGTTCATGGCGATTCGGT 298
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 317 TTCAATTTACTTCTTGGTGATATCTGATCAATTTGATGAGAATGTTCATGGTGATTCAGT 376
Query 299 TATCAATAGTACAACGAGGTTATCGGAATCTGTAATGGGGATCTCCTTAGGCTATTTTAT 358
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 377 CATTAATAGTACAACGAGGTTATCGGAATCTGTAATGGGGATCTCCTTAGGCTATTTTCT 436
Query 359 AGCAGATTTAGCAATGATCTTTTGGCATTTTCCTACTCTTGGTGGTATTGAATATGTTTT 418
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 437 AGCAGACTTAGCAATGATCTTTTGGTATTTTCCTACTCTTGGTGGTATTGAATATGTTTT 496
Query 419 TCATCACCTCATATCGATGTTTGCGATCTTTCTGTCTGTCACAAGTGGGCAAAGTCAGTT 478
||||||| || ||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 497 TCATCACTTCTTATCGATGTTTGCCATCATTCTTTCTGTCACAAGTGGGCAAAGTCAGTT 556
Query 479 CTATATCTTCTTAGTTCTCTTATCAGAGGCCACAACCCCGTTTGTTAATCTACGGTGGTA 538
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 557 CTACATCTTCTTAGTTCTCTTATCAGAGGCTACAACCCCGTTTGTTAATCTACGGTGGTA 616
Query 539 CTTGGATAATAGTGGTCAAAAAGGCTCCAAGGCTTACACGCTGAACGGGATTGCCCTGTT 598
||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||
Sbjct 617 CTTGGATAATAGTGGTCAAAAAGGCTCAAAGGCTTACACGCTCAACGGAATTGCTTTGTT 676
Query 599 CTTGGGTTGGCTGGTTGCGAGGATCCTTTTGTTTATCTACTTCTTTGTCCACATGTACCT 658
|||||| ||||||||||||||| ||||||||||||||| ||||||||| |||||||||||
Sbjct 677 CTTGGGGTGGCTGGTTGCGAGGGTCCTTTTGTTTATCTTCTTCTTTGTTCACATGTACCT 736
Query 659 CCATTTCCATCAGGTGAAGCAAGTGTTTCCACTGGGATTTTACAGCCTTCTTAC-ATTGC 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 737 CCATTTCCATCAGGTGAAGCAAGTGTTTCCACTGGGATTTTACAGCCTTCTTACGATA-C 795
Query 718 CACCGGCTCTAGCAGTGATGAATCTCCTTTGGTTTTGGAAAATCACCAAAGGATTGATCA 777
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 796 CACCGGCTCTAGCAGTGATGAATCTCCTTTGGTTCTGGAAAATCACCAAAGGATTGATCA 855
Query 778 AAACACTCTCCAAGGCGAAAACATCGGGAATGAAGAAACAGTGATGCTTGCCCTGGAAAA 837
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||
Sbjct 856 AAACACTCTCCAAGGCGAAAACATCGGGGATGAAGAAACAGTGATGGTTACCCTGAAAAA 915
Query 838 GATTTT 843
||||||
Sbjct 916 GATTTT 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5