BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942850
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10380.1 | Symbols: NIP5;1, NLM6, NLM8 | NOD26-like intrinsi... 1500 0.0
> AT4G10380.1 | Symbols: NIP5;1, NLM6, NLM8 | NOD26-like intrinsic
protein 5;1 | chr4:6431236-6434822 REVERSE LENGTH=1521
Length=1521
Score = 1500 bits (812), Expect = 0.0
Identities = 906/953 (95%), Gaps = 0/953 (0%)
Strand=Plus/Plus
Query 3 AAAAAATAAACGTTGGAAATGGCTCCACCGGAGGCTGAGGTGGGTTCGGTTGTGGTGATG 62
|||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 295 AAAAAAAAAACGTTGGAAATGGCTCCACCGGAGGCTGAGGTGGGTGCGGTAATGGTGATG 354
Query 63 GCTCCTCCTACCCCGGGAACGCCGGGAACACCGGGAGGGCCGTTGATCACGGGAATGAGA 122
|||||||| || ||||| || ||||||||||||||||| |||||||||||||| ||||||
Sbjct 355 GCTCCTCCAACGCCGGGGACACCGGGAACACCGGGAGGACCGTTGATCACGGGGATGAGA 414
Query 123 GTGGATTCAATGTCATTCGATCATCGGAAACCAACGCCTCGATGCAAATGCTTGCCGGTG 182
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GTGGATTCAATGTCGTTTGATCATCGGAAACCAACGCCTCGATGCAAATGCTTGCCGGTG 474
Query 183 ATGGGATCAACTTGGGGTCAACATGACACATGTTTCACCGATTTTCCCTCTCCTGATGTC 242
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 475 ATGGGATCAACTTGGGGTCAACATGACACATGCTTCACCGATTTTCCCTCTCCTGATGTC 534
Query 243 TCCCTCACTCGCAAGCTTGGAGCCGAGTTCGTGGGAACATTCATCTTGATATTCACCGCG 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TCCCTCACTCGCAAGCTTGGAGCCGAGTTCGTGGGAACATTCATCTTGATATTCACCGCG 594
Query 303 ACAGCCGGTCCAATCGTGAACCAGAAATACGACGGAGCAGAAACCCTAATCGGTAACGCG 362
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 595 ACAGCCGGTCCAATCGTGAACCAGAAATACGATGGAGCAGAAACCCTAATCGGTAACGCT 654
Query 363 GCATGCGCAGGACTCGCAGTGATGATCATAATACTATCAACGGGTCACATCTCAGGGGCT 422
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 655 GCATGCGCAGGACTCGCAGTGATGATCATAATACTCTCAACAGGTCATATCTCAGGGGCT 714
Query 423 CATCTAAACCCATCACTGACCATAGCATTCGCAGCTCTAAGGCACTTCCCTTGGGCTCAC 482
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 715 CACCTAAACCCATCACTGACCATAGCATTCGCTGCTCTAAGGCACTTCCCTTGGGCACAC 774
Query 483 GTGCCTGCTTACATTGCAGCTCAAGTCTCAGCTTCCATTTGTGCTTCATTCGCACTTAAA 542
|| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 775 GTCCCTGCTTACATAGCGGCTCAAGTCTCAGCTTCCATTTGCGCTTCATTCGCACTTAAA 834
Query 543 GGAGTGTTCCATCCTTTTATGTCCGGAGGTGTCACTGTTCCATCTGTTAGCCTCGGACAA 602
|||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||
Sbjct 835 GGAGTGTTCCATCCTTTTATGTCCGGTGGTGTCACTATTCCATCTGTTAGCCTTGGACAA 894
Query 603 GCCTTTGCTCTTGAGTTCATCATCACTTTCATTCTCCTCTTTGTCGTCACTGCCGTCGCC 662
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 895 GCCTTTGCTCTTGAGTTCATCATCACTTTCATTCTCCTCTTTGTTGTAACTGCCGTCGCT 954
Query 663 ACCGACACTCGTGCCGTTGGAGAATTAGCAGGTATAGCTGTTGGAGCCACGGTCATGCTC 722
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 955 ACCGACACTCGTGCCGTTGGAGAATTGGCAGGTATAGCCGTTGGAGCCACGGTCATGCTC 1014
Query 723 AACATTCTAGTCGCAGGGCCATCGACTGGTGGATCTATGAATCCCGTGAGGACTCTAGGA 782
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1015 AATATTCTAGTCGCAGGGCCATCGACTGGTGGATCTATGAATCCTGTGAGAACTCTAGGA 1074
Query 783 CCAGCCGTTGCATCAGGAAACTATAGGGCAGTTTGGGTTTATCTGGTGGCTCCTACACTT 842
||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||
Sbjct 1075 CCAGCCGTTGCATCAGGAAACTATAGGTCACTATGGGTGTATCTGGTGGCTCCTACACTT 1134
Query 843 GGTGCAATATCCGGTGCAGCCGTCTACACAGGTGTTAAACTTAACGATAGCGAGACCGAC 902
||||| ||||| |||||||| ||||||||||||||||| ||||||||||||| ||| |||
Sbjct 1135 GGTGCCATATCTGGTGCAGCGGTCTACACAGGTGTTAAGCTTAACGATAGCGTGACTGAC 1194
Query 903 CCGCCTCGTCAGGTTAGGAGCTTTCGTCGTTAAGTGAGTGAGAGACTTGTTTA 955
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 CCGCCTCGTCCGGTTAGGAGCTTTCGTCGTTAAGTGAGTGAGAGACTTGTTTA 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46717756710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5