BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942853
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10430.1 | Symbols: | TMPIT-like protein | chr4:6454881-645... 1772 0.0
AT1G33230.1 | Symbols: | TMPIT-like protein | chr1:12046641-12... 1020 0.0
AT4G10414.1 | Symbols: | Pseudogene of AT4G10430 | chr4:645131... 473 1e-132
> AT4G10430.1 | Symbols: | TMPIT-like protein | chr4:6454881-6458089
REVERSE LENGTH=1366
Length=1366
Score = 1772 bits (959), Expect = 0.0
Identities = 1044/1086 (96%), Gaps = 2/1086 (0%)
Strand=Plus/Plus
Query 1 TTCGCAATCATCAACCATCGATGGAAGTCGAAGAAGAAGTTAAACGAATCATAGATGAGG 60
||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||
Sbjct 74 TTCGCAATCATCAACCATCAATGGAAGTTGAAGAAGAAGTTAAACAAATCATAGATGAGG 133
Query 61 TTAAGGACCTTCATGACTCCGCCGCTTCATTCATCTCATCATCTTCTCAACAAGAGCTCT 120
| || || |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 134 TCAAAGAGCTTCATGACTCCGCCGCTTCTTTCATCTCATCTTCTTCTCAACAAGAGCTCT 193
Query 121 CTCTCCGTCTAAAAGCCTCCTCCGTTGATTCCTCTATCCGTCGTCTCCACTCTACTCTCG 180
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 194 CTCTCCGTCAAAAAGCCTCCGCCGTTGATTCCTCTATCCGTCGTCTCCACTCTACTATCG 253
Query 181 TCTCCAACAAAAATCTCGATCCTAAACTCGTCGAGAAGCTTGAAGAGGATCTGCATCGTG 240
||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||
Sbjct 254 TCTCCAACAAAAATCTCGATCCTAAGCTCGTCGAAAAGCTTGAGGAAGATCTGCATCGTG 313
Query 241 CTAGATGCATGCTTGTTGATGGAGAAACATCTTCATTTCTACCATCAAAACCTCAAGGAC 300
||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||
Sbjct 314 CTAGATGCATGCTTGTTGACGGAGAAACATCTTCATTTCTCCCATCCAAACCACAAGGAC 373
Query 301 GTTTTGTGAGAATGTTTTGTGGACCTGTGAATGTTCGAGCTTTGCGTAAAGATGTTCAGC 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 GCTTTGTGAGAATGTTTTGTGGACCTGTGAATGTTCGAGCTTTGCGTAAAGATGTTCAGC 433
Query 361 TTAAAGTTAAAGAAGAATACAATCGTTACAGAGATAAGACTGCTCTTCtttttctttttt 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 434 TTAAAGTTAAAGAAGAATACAATCGTTACAGAGACAAGACTGCTCTTCTTTTTCTTTTTT 493
Query 421 tCCCTGCAACACTTTTAATCCTTAGATCTTATTATTGGGGTGGATGTTTGCCTGCGTTTC 480
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 494 TCCCTGCCACACTTTTAATCCTTAGGTCTTATTATTGGGGTGGATGTTTGCCTGCGTTTC 553
Query 481 CTGTTCAGCTCTATGAGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGTGAGA 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 CTGTCCAGCTCTATGAGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGTGAGA 613
Query 541 ACATATTAAGAGCTAACGGGAGCGATATTCGTCCATGGTGGCTATATCATCATTATTGTG 600
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 614 ATATATTAAGAGCTAACGGAAGCGATATTCGTCCATGGTGGCTATATCATCATTATTGTG 673
Query 601 CCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 CCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCC 733
Query 661 AGAAACAGAGAGGAGTCCATCTTTTCCTGCAATGGGCTATGATGCAAGGCGTTGCCATGC 720
|||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 734 AGAAACAGAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCCATGC 793
Query 721 TTCTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAGGCTA 780
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TTTTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAGGCTA 853
Query 781 AGAGAATGGATGTCGTATGGGGAGAAACGGCTGGCGTTGATGGACAATTATGGCTGTTAT 840
||||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 854 AGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTGATGGACAACTATGGCTGTTAT 913
Query 841 GTCCCATACTGTTCATTTTACAGGTGTTTGAAGCATACGTTGGACTGCTGTTGCTAAGAA 900
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 GTCCTATACTGTTCATTTTACAGGTGTTTGAAGCATACGTTGGACTGCTGTTGCTAAGAA 973
Query 901 AAACAGTAACTGGAGTTGTTAATGAATGGCAGGTGATGGTTTGTGGCATTCTTCTGGTAG 960
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 974 AAACAGTAACTGGAGTTGTTAATGAATGGCAGGTGATGGTTTGTGGGATTCTTCTGGTAG 1033
Query 961 TGATGGCTGTTGGGAACTTCATAAACACAGTAGAGACACTGATGGCAAAGTCAAGAGTTA 1020
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1034 TGATGGCAGTTGGGAACTTCATAAATACAGTAGAGACACTGATGGCAAAGTCAAGAGTTA 1093
Query 1021 AGGCAAAGATGATGAGGAGTAAAAGCAGAGCAGAGCTTAATTAGACTTCACAGGTCTC-- 1078
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 AGGCAAAGATGAAGAGAAGTAAAAGCAGAGCAGAGCTTAATTAGACTTCACAGGTCTCTC 1153
Query 1079 ATCTGT 1084
||||||
Sbjct 1154 ATCTGT 1159
> AT1G33230.1 | Symbols: | TMPIT-like protein | chr1:12046641-12050066
FORWARD LENGTH=1519
Length=1519
Score = 1020 bits (552), Expect = 0.0
Identities = 900/1068 (84%), Gaps = 24/1068 (2%)
Strand=Plus/Plus
Query 14 ACCATCGATGGAAGTCGAAGAAGAAGTTAAACGAATCATAGATGAGGTTAAGGACCTTCA 73
||||| || || || ||||||||||| | ||||||| | || | ||||| || |||||
Sbjct 201 ACCATGGA-AGAGGTTGAAGAAGAAGTGAGACGAATCGTCGAACAAGTTAAAGAGCTTCA 259
Query 74 TGACTCCGCCGCTTCATTCATCTCATCATCTTCTCAACAAGAGCTCTCTCTCCGTCTAA- 132
|||||| || | || ||| |||| || ||||||||| ||||||| |||||||| |||
Sbjct 260 TGACTCTTCCACATCCTTCGTCTCTTCTTCTTCTCAAGAAGAGCTTTCTCTCCG--TAAC 317
Query 133 A-AGCCTCC-TCCGTTGATTCCTCTATCCGTCGTCTCCACTCTACTCTCGTCTCCAACAA 190
| ||||||| | |||||| || || ||||| ||||| || |||||||| | ||| ||||
Sbjct 318 AGAGCCTCCGT-CGTTGACTCATCAATCCGCCGTCTTCATTCTACTCTTGCCTCTGACAA 376
Query 191 AAATCTCGATCCTAAACTCGTCGAGAAGCTTGAAGAGGATCTGCATCGTGCTAGATGCAT 250
| |||||||||| || || |||| ||||| |||||||||||||| || |||||||||||
Sbjct 377 ACATCTCGATCCCAAGCTTTTCGAAAAGCTAGAAGAGGATCTGCAACGAGCTAGATGCAT 436
Query 251 GCTTGTTGATGGAGAAACATCTTCATTTCTACCATCAAAACCTCAAGGACGTTTTGTGAG 310
||||| |||||||| || || || ||||| ||||| |||||||||||||||||||||||
Sbjct 437 GCTTGCAGATGGAGACACTTCATCGTTTCTTCCATCTAAACCTCAAGGACGTTTTGTGAG 496
Query 311 AATG-TTTTGTGGACCTGTGAATGTTCGAGCTTTGCGTAAAGATGTTCAGCTTAAAGTTA 369
|||| ||||| ||||||||||||||| |||||| || |||||| | |||||||||||||
Sbjct 497 AATGTTTTTG-GGACCTGTGAATGTTAGAGCTTCACGAAAAGATATACAGCTTAAAGTTA 555
Query 370 AAGAAGAATACAATCGTTACAGAGATAAGACTGCTCTTCtttttctttttttCCCTGCAA 429
|||||||||| ||| | |||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct 556 AAGAAGAATATAATAGCTACAGAGATAGGACAGCTCTTCTTTTTCTTGTTTTCCCTGCAA 615
Query 430 CACTTTTAATC-CTTAGATCTTAT-TATTGGGGTGGATGTTTGCCTGCGTTTCCTGTTCA 487
|||||| | | || ||||||||| | ||||| ||||||||||||||| || ||||||||
Sbjct 616 TACTTTTGA-CACTAAGATCTTATGT-TTGGGATGGATGTTTGCCTGCATTCCCTGTTCA 673
Query 488 GCTCTATGAGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGTGAGAACATATT 547
|||||| |||||||||| ||||||| |||||||| |||| |||||| |||||||| ||
Sbjct 674 GCTCTACCAGGCTTGGCTACTGTTTCTTTATGCTGGTTTGGTTATGCGAGAGAACATTTT 733
Query 548 AAGAGCTAACGGGAGCGATATTCGTCCATGGTGGCTATATCATCATTATTGTGCCATGGC 607
||||||||| ||||| ||||| ||| |||||||||| ||||||||||||| ||| |||||
Sbjct 734 AAGAGCTAATGGGAGTGATATCCGTTCATGGTGGCTTTATCATCATTATTTTGCAATGGC 793
Query 608 TATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCCAGAAACA 667
|||| |||||||||| ||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct 794 TATGTCCCTTGTCAGTCTCACTTGGGAAATCAAAGGTCAACCAAACTGCGTTCAGAAGCA 853
Query 668 GAGAGGAGTCCATCTTTTCCTGCAATGGGCTATGATGCAAGGCGTTGCCATGCTTCTACA 727
|| |||||| | ||||||||| |||||||||||||||||||| || || |||||||| ||
Sbjct 854 GAAAGGAGTGCGTCTTTTCCTCCAATGGGCTATGATGCAAGGTGTCGCGATGCTTCTGCA 913
Query 728 AAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAGGCTAAGAGAAT 787
||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 914 AAATAGATATCAGCGCCAAAGATTATACACTCGCATTGCACTTGGAAAGGCTAAAAGGAT 973
Query 788 GGATGTCGTATGGGGAGAAACGGCTGGCGTTGATGGACAATTATGGCTGTTATGTCCCAT 847
||| ||||||||||||||||||||||| || ||||| ||| ||| ||| |||| ||| ||
Sbjct 974 GGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCAACTATTGCTATTATTTCCTAT 1033
Query 848 ACTGTTCATTTTACAGGTG-TTTGAAGCATACGTTGGACTGCTGTTGCTAAGAAAAACAG 906
|||||| |||||||| | |||||||||||||| ||| | | |||||| || | | |
Sbjct 1034 TTTGTTCACTTTACAGG-GCTTTGAAGCATACGTGGGATTCCAGTTGCTTAGGACAGT-G 1091
Query 907 TA-ACTGGAGTT-GTTAATGAATGGCAGGTGAT-GGTTTGTGGCATTCTTCTGGTAGTGA 963
| | ||| | | || |||||||||||| || ||||||||||||||||||||| ||||
Sbjct 1092 TTGA-TGGGGGTAGTCGCTGAATGGCAGGT-ATTGGTTTGTGGCATTCTTCTGGTTGTGA 1149
Query 964 TGGCTGTTGGGAACTTCATAAACACAGTAGAGACACTGATGGCAAAGTCAAGAGTT-AAG 1022
|||| |||| |||||||||||||||||||||||||| |||| ||||| ||| || |||
Sbjct 1150 TGGCCATTGGAAACTTCATAAACACAGTAGAGACACTAATGGTGAAGTCGAGA-TTCAAG 1208
Query 1023 GCAAAGATGATGAGGAGTAAAAGCAGAGCAGAGCTTA-ATTAGACTTC 1069
|| ||||||| ||| ||||||||||||||||| ||| |||| |||||
Sbjct 1209 GCGAAGATGAAGAGAAGTAAAAGCAGAGCAGAACTTTGATTAAACTTC 1256
> AT4G10414.1 | Symbols: | Pseudogene of AT4G10430 | chr4:6451317-6452716
REVERSE LENGTH=556
Length=556
Score = 473 bits (256), Expect = 1e-132
Identities = 346/386 (90%), Gaps = 19/386 (5%)
Strand=Plus/Plus
Query 496 AGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGT-GAGAACATATTAAGAGCT 554
||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 169 AGGCTTGGCTGTTGTTTCTCTATGCTGGGTTAGCTATGC-TAGAGAACATATTAAGAGCT 227
Query 555 AACGGGAGCGATATTCGTCCATGG---------TGGCTATATCATCATTATTGTGCCATG 605
|| |||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 228 AAGGGGAGCAATATTCGTCCATGGTACTCTTATTGGCTATATCATCACTATTGTGCCATG 287
Query 606 GCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCCAGAAA 665
||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 288 GCTCTGGCCCTTGTCAGCCTCACTTGGGAAAGCAAAGGTCAACCAAACTGTGTCCAGAAA 347
Query 666 CAGAGAGGAGTCCATCTTTTCCTGCAATGGGCTATGATGC-A-AGGCGTTGCCATGCTTC 723
||||||||||||||||||||||| |||||||||||||||| | ||| || ||||||||||
Sbjct 348 CAGAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGAGGTGTCGCCATGCTTC 407
Query 724 TACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAG--G-CTA 780
|| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 408 TATAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAGCAGGCTA 467
Query 781 AGAGAATGGATGTCGTATGGGGAGAAACGGCTGGCGTTGATGGACAATTATGGCTGTTAT 840
|||||||| |||| |||||||||||||| |||||||||| |||||| ||||||| ||||
Sbjct 468 AGAGAATGTATGTTGTATGGGGAGAAACAGCTGGCGTTGGCGGACAACTATGGCTCTTAT 527
Query 841 GTCCCATACTGTTCATTTTACAGGTG 866
|| || || ||||| |||||||||
Sbjct 528 GT---ATGCTATTCATATTACAGGTG 550
Score = 111 bits (60), Expect = 1e-23
Identities = 96/112 (86%), Gaps = 7/112 (6%)
Strand=Plus/Plus
Query 392 AGATAAGACTGCTCTTC-ttt--ttcttttttt--CCCTGCAACACTT-TTAATCCTTAG 445
||| ||||||||||||| ||| || ||||||| ||||| |||| || |||| ||||||
Sbjct 3 AGACAAGACTGCTCTTCTTTTCCTTTTTTTTTTCCCCCTGAAACA-TTATTAAACCTTAG 61
Query 446 ATCTTATTATTGGGGTGGATGTTTGCCTGCGTTTCCTGTTCAGCTCTATGAG 497
|||||||||||||||||||||||||||||| | |||| | |||||||| |||
Sbjct 62 ATCTTATTATTGGGGTGGATGTTTGCCTGCATCTCCTCTCCAGCTCTACGAG 113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53112176610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5