BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942855
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10450.1 | Symbols: | Ribosomal protein L6 family | chr4:64... 987 0.0
> AT4G10450.1 | Symbols: | Ribosomal protein L6 family | chr4:6462953-6464544
REVERSE LENGTH=919
Length=919
Score = 987 bits (534), Expect = 0.0
Identities = 581/604 (96%), Gaps = 2/604 (0%)
Strand=Plus/Plus
Query 18 AAAATGAAGACCATTTTGTCATCTGAGACGATGGACATTCCCGACGGCGTGGCCATTAAG 77
|||||||||||||||||||| || ||||| |||||||| ||||||||||| |||||||||
Sbjct 84 AAAATGAAGACCATTTTGTCCTCGGAGACTATGGACATCCCCGACGGCGTCGCCATTAAG 143
Query 78 GTAAACGCCAAGGTCATTGAAGTGGAAGGTCCACGAGGTAAACTCACTCGTGACTTCAAG 137
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 144 GTAAACGCCAAGGTGATTGAGGTCGAAGGTCCACGAGGTAAACTCACTCGTGACTTCAAG 203
Query 138 CATCTCAATCTCGATTTCCAGTTGATTAAAGACGAAGTCACTGGAAAACGTCAGCTTAAG 197
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 204 CATCTGAATCTCGATTTCCAGTTGATTAAAGACCAAGTCACTGGAAAACGTCAGCTTAAG 263
Query 198 ATTGATTCTTGGTTTGGTTCTCGTAAGACAAGTGCTTCTATTAGAACTGCTTTAAGCCAT 257
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 264 ATTGATTCTTGGTTTGGTTCTCGTAAGACAAGTGCTTCGATTAGAACTGCTTTAAGCCAT 323
Query 258 GTTGATAATCTCATTGCTGGTGTTACTCAAGGTTTTCTTTATAAAATGAGGTTTGTGTAT 317
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 324 GTTGATAATCTCATTGCTGGTGTTACTCAAGGTTTTCTTTATAGAATGAGATTTGTGTAT 383
Query 318 GCTCATTTTCCTATCAATGCTTCTATTGATGGTAACAATAAGAGTATTGAGATTCGTAAC 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 GCTCATTTTCCTATCAATGCTTCTATTGATGGTAACAATAAGAGTATTGAGATTCGTAAC 443
Query 378 TTCCTTGGTGAGAAGAAGGTGAGGAAGGTTGAGATGTTGGATGGTGTTAAGATTGTTCGG 437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TTCCTTGGTGAGAAGAAGGTGAGGAAGGTTGAGATGTTGGATGGTGTTAAGATTGTTCGA 503
Query 438 TCTGAGAAGGTTAAGGATGAGATTATTCTTGAGGGAAATGATATTGAG-TTAGTGTCACG 496
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 504 TCTGAGAAGGTTAAGGATGAGATTATTCTTGAGGGAAATGATATTGAGCTT-GTTTCACG 562
Query 497 GTCTTGTGCTTTGATCAATCAGAAATGTCATGTGAAGAAGAAGGATATTAGGAAGTTTCT 556
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 563 GTCTTGTGCTTTGATCAATCAGAAATGTCATGTGAAGAAGAAGGATATCAGGAAGTTTCT 622
Query 557 TGATGGTATCTATGTGAGCGAGAAAGGGAAGATCGCTGTTGAGGAATGAAGTTTGCTATT 616
||||||||||||||||||||||||||| |||||||| || ||||||||||||| ||||||
Sbjct 623 TGATGGTATCTATGTGAGCGAGAAAGGCAAGATCGCAGTCGAGGAATGAAGTTCGCTATT 682
Query 617 CAAA 620
|||
Sbjct 683 GAAA 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30140488200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5