BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942863
Length=592
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10465.1 | Symbols: | Heavy metal transport/detoxification ... 865 0.0
> AT4G10465.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr4:6473547-6475434 FORWARD LENGTH=884
Length=884
Score = 865 bits (468), Expect = 0.0
Identities = 544/581 (94%), Gaps = 3/581 (1%)
Strand=Plus/Plus
Query 12 TAGACGTAGATGTCTTCCTTGATTA-TGAAAAGTCTCGGGTCCATTGTCTCTATCATTAC 70
||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 27 TAGTCGTAGATGTCTTCCTTGA-TAGTGAAAAGTCTCGGGTCCATTGTCTCTATCATTGC 85
Query 71 AAGAATTTTCTCCTTTCGACGCGGTCGTTATGTGTCTAATCCAAGAACCACAACACATAT 130
||||||||||| ||||||||| | ||| ||||||||||||||||||||| |||||||
Sbjct 86 AAGAATTTTCTTCTTTCGACGTAGCCGTCCTGTGTCTAATCCAAGAACCACCGCACATAT 145
Query 131 AAGCTACTTCAGGATGTCTAGGAAACGTCCACTCTCTTTGCAGACGGTTGAGCTCAAGGT 190
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 146 AAGCTACTTCAGGATGTCTAGGAAACGTCCACTCTCTTTGCAGACGGTTGAGCTGAAGGT 205
Query 191 CAGAATGTGTTGCACCGGTTGCGTCAAGATCGTTAGGAACGCAATCTCCAAACTCCGAGG 250
||||||||||| || |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 206 AAGAATGTGTTGTACTGGTTGCGTCAGGATCGTTAGGAACGCGATCTCCAAACTCCGAGG 265
Query 251 AGTTGATTCAGTGGAGGTGGATAGAGAGTTGGGAAGAGTAAGAGTGGTGGGTTACGTTGA 310
|||||| |||||||||||||||| |||||| |||||||| |||||||||||||| |||||
Sbjct 266 AGTTGACTCAGTGGAGGTGGATAAAGAGTTAGGAAGAGTGAGAGTGGTGGGTTATGTTGA 325
Query 311 CAGAAACAAAGTGCTCAAAGCCGTGAGGCGAGCTGGGAAGAGAGCTGAGTTTTGGCCATA 370
|||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 326 CAGAAACAAAGTACTCAAAGCCGTGAGGCGAGCGGGGAAGAGAGCTGAGTTTTCGCCATA 385
Query 371 CCCTGAGCCTCCACTTTACTTCACATCTACTCAAAACTACTTCGTAGATCCTTCTAAAGA 430
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 386 CCCTGAACCTCCACTTTACTTCACATCTACTCAAAACTATTTCGTAGATCCTTCGAAAGA 445
Query 431 GTTTAAAGAGAGCTATAACTATTATAGGCATGGCTACAATGGTACGGAACAACATGGTAA 490
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 446 GTTTAAAGAGAGCTATAACTATTATAGACATGGCTACAATGGTACAGAACAACATGGTAA 505
Query 491 TATTCCCGTAGGTTCTCGTGGAGACGATAGGGTTAGTAATATGTTCAATGACGATAACGT 550
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 506 TATCCCCGTAGGTTCTCGTGGAGACGACAGGGTTAGTAATATGTTCAATGACGATAACGT 565
Query 551 TAATGCATGCCGTCTCATGTAA-CTACATGCATAACGACTT 590
|||||||||||||||||||||| |||||| | ||| |||||
Sbjct 566 TAATGCATGCCGTCTCATGTAAACTACATACGTAATGACTT 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28482761349
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5