BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942864

Length=1856
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10470.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   418    1e-115


> AT4G10470.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G33050.2); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr4:6476014-6477883 FORWARD LENGTH=1533
Length=1533

 Score =  418 bits (226),  Expect = 1e-115
 Identities = 263/281 (94%), Gaps = 2/281 (1%)
 Strand=Plus/Plus

Query  1350  TGACTTTGGCGATAGACACGGCTGTTCCACATCATCACCATCTCGAAAAA-TGGATGTTA  1408
             ||||||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct  848   TGACTTTGGTGATAGACATGGCTGTTCCACATCATCACCATCTC-AAAAAGTGGATGTTA  906

Query  1409  AGAAACTCCTTACGACGATTCATGGACTGTCAGAGTTGCTAACACATGTACACAGTTCAG  1468
             ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  907   AGAAACTACTTACGACGATTCATGGATTGTCAGAGTTGCTAACACATGTACACAGTTCAG  966

Query  1469  AAACTTCAGATTTACCAAATGAGCAATATCTTGATCTCATCAACTGTACTGTGCAGAATC  1528
             ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  967   AAACTTCGGATTTACCAAATGAGCAGTATCTTGATCTCATCAACTGTACTGTGCAGAATC  1026

Query  1529  TCAACTCTTACATCAATAACAAAGTTCAGGAGCATACTGGGAATCATTCAAGCGCTGTAC  1588
             ||||||| || |||||||||| |||||||||||||| |||| || || |||| |||||||
Sbjct  1027  TCAACTCCTATATCAATAACAGAGTTCAGGAGCATAGTGGGGATTATGCAAGTGCTGTAC  1086

Query  1589  ACAGTTCATGTGATTTATATTCGTTGCCTTATATGCGTAAG  1629
             | ||||||||||||||||||||||||||| |||||||||||
Sbjct  1087  ATAGTTCATGTGATTTATATTCGTTGCCTAATATGCGTAAG  1127


 Score =  346 bits (187),  Expect = 5e-94
 Identities = 302/355 (85%), Gaps = 17/355 (5%)
 Strand=Plus/Plus

Query  725   GTTCCAACCAAAACACTAGAAGAAGCGTCCTTATCCATCATGTAGATGAAAGTTTGGGTT  784
             ||||||||||||||||||||| | ||||||| |||||| ||| |||||| ||||||||||
Sbjct  382   GTTCCAACCAAAACACTAGAATAGGCGTCCTGATCCATGATGCAGATGAGAGTTTGGGTT  441

Query  785   TGGTTTCTCAAGAGAGTCTTTCCAACACTATGAGCGTGTTAGATATTGA-CAAAGAGTTC  843
             | || |||||||| ||| ||||||||||||||||  ||||||||||| | ||| ||||||
Sbjct  442   TAGTATCTCAAGATAGTGTTTCCAACACTATGAGTATGTTAGATATT-AGCAACGAGTTC  500

Query  844   CAAAAGTCTACAAAGCTGGATCCTTTGGCTCCTGTGTTTGTTCCTGCTTGTGCAAAAGTA  903
             |||||||||| |||||||||||| || |||||||| ||||||||||||||||||||| | 
Sbjct  501   CAAAAGTCTAAAAAGCTGGATCCGTTAGCTCCTGTTTTTGTTCCTGCTTGTGCAAAACT-  559

Query  904   AATGCCGTCGTTCGTGAGAAGCATGGTGCAGCGGATCACATGATAACTATGGAGACAAAT  963
             ||           |||||||||| |||||||| ||||||||| |||||||||||||||||
Sbjct  560   AA-----------GTGAGAAGCACGGTGCAGCAGATCACATGTTAACTATGGAGACAAAT  608

Query  964   GTTGGCTCAACTTCTGGTTTAAGTTCTCCAGACAATATGTTGCTTTCTAATGTAAAGGTT  1023
             |||||||||||||||||| |||||||| |||||| ||||||||||  || | | ||||||
Sbjct  609   GTTGGCTCAACTTCTGGTGTAAGTTCTTCAGACAGTATGTTGCTTAATACTTTTAAGGTT  668

Query  1024  GA-G--ACACATTCTTCAGAGGTCCACGGCAGTTTAAAGAATCGATACTCTAATA  1075
             |  |  |||||||||| || |||| || ||||||||| |||| ||||||||||||
Sbjct  669   GTTGGGACACATTCTTTAGTGGTCGACCGCAGTTTAAGGAATAGATACTCTAATA  723


 Score =  182 bits (98),  Expect = 1e-44
 Identities = 123/135 (91%), Gaps = 1/135 (1%)
 Strand=Plus/Plus

Query  1144  AATACAAAACTGGATAGGTCCAGCAACAAGTCTCATGGTCGGAAGAAACTAAATCCTCTG  1203
             ||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  720   AATACAAGATTGGATAGGTCCAGCAACAAGTCTCATGGTCGGAAGAAGCTAAATCCTCTG  779

Query  1204  GCCCCTCAGTTCTCACTAGCAGATAATAAACAAAAAGTAAATGGCTGTGAGAAAAACCAA  1263
             || |||| |||||||||||||||| |||||||||| ||| |||||||||||  |||||||
Sbjct  780   GCTCCTCGGTTCTCACTAGCAGATCATAAACAAAATGTATATGGCTGTGAGGTAAACCAA  839

Query  1264  GGTGCAAATGA-TTT  1277
             | ||||||||| |||
Sbjct  840   GCTGCAAATGACTTT  854


 Score = 97.1 bits (52),  Expect = 5e-19
 Identities = 67/74 (91%), Gaps = 2/74 (3%)
 Strand=Plus/Plus

Query  1780  AAGGTTATAGGGAATCATCATCAAACAGAAGAGCAAATCAATCTAG-G-TGTGTTTTAAT  1837
             ||||||||| | ||||||||||||||||||||||||||||| | || | |||||||| ||
Sbjct  1125  AAGGTTATAAGAAATCATCATCAAACAGAAGAGCAAATCAACCCAGAGGTGTGTTTTTAT  1184

Query  1838  AAAAGCTTATGGCT  1851
             ||||||||||||||
Sbjct  1185  AAAAGCTTATGGCT  1198



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 91866997350


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5