BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942876
Length=593
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55680.1 | Symbols: | Plant invertase/pectin methylesterase... 274 7e-73
> AT3G55680.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:20665685-20666315 REVERSE
LENGTH=552
Length=552
Score = 274 bits (148), Expect = 7e-73
Identities = 402/520 (77%), Gaps = 36/520 (7%)
Strand=Plus/Plus
Query 21 ATGGCCACAATGTTCATCAAACACATCATGTTT-CCTTTGTCGTTGTTATTACTCTTGTT 79
|||||| ||||| ||||||||||| | | ||| |||| |||||||||| || || ||||
Sbjct 1 ATGGCCTCAATGCTCATCAAACAC-TTAACTTTGCCTTCGTCGTTGTTAGTATTCGTGTT 59
Query 80 CATTGCGTCTCCAACT-ACAAACGCGATGCT-TATCAAAGACATGTATACATTTTGCAAG 137
| |||||| | | | | || | |||||| | |||||| |||||||| |||||||||||
Sbjct 60 CTTTGCGTTTAC-AGTCGCAGATGCGATG-TCTATCAAGGACATGTACGCATTTTGCAAG 117
Query 138 GAGACAGCA-GATGTGGACTTCTGCTTGAAATACATTGGAACGGACAAACGTATATTAGC 196
|| |||| | || || |||||||||||||||||||||||||||||| |||||| |||||
Sbjct 118 GATACAG-ATGACGTCAACTTCTGCTTGAAATACATTGGAACGGACATACGTATCTTAGC 176
Query 197 CGCAAAAGACTTCAACGACGTTCTT-TTAATTGCGTTTTCTCAGTGCAAAATCCAAGTGA 255
|||| ||| || | || || ||| || ||||| ||||||| ||| |||||||| |||
Sbjct 177 CGCACGCGACCTCCATGATGTGCTTGTT-ATTGCAATTTCTCAATGCCAAATCCAATTGA 235
Query 256 GCGAGGCAACCAAACAAATCAACAAAGTCCGTCAAAACTTTAGTGGTCCGAATGGGAAAA 315
| ||||||||||||||||||||||||| || ||||| ||||||||||||| |||||
Sbjct 236 CCAAGGCAACCAAACAAATCAACAAAGTTCGCCAAAAGTTTAGTGGTCCGATTGGGACTC 295
Query 316 GACGAATCAAACGTTGTGAGATAA--ACTA-TGGGCTAGCTTCAGCTTTATTCGATGAAG 372
||||| || | ||| | || || |||| || |||| || ||||| ||| | |||
Sbjct 296 GACGACTCTATTTTTGCG-GA-AAGCACTACTGTT-TAGCGTCTGCTTTCTTCCAA-AAG 351
Query 373 -CTTATGAA-ATAGGA-ATACTAA-AAGGGGTACAAAACAA-AGCTCA-CAATGCCGCAT 426
|||||||| | || | | | || ||||| | | | | | |||||| | | | |||
Sbjct 352 GCTTATGAAGA-AGCACA-AG-AAGAAGGGCT-CGAGTCCATAGCTCAGCTTT-CTGCAG 406
Query 427 TGGATGGCTTAGACTATGTGCGTGCA--TGCGAAGACGAATGGAAGA-TCAATGGTCC-A 482
||||||||| | ||||| || | || |||||||| |||||||| | | ||||| || |
Sbjct 407 TGGATGGCTCACACTATATGT-T-CAAATGCGAAGATGAATGGAAAAAT-AATGGACCGA 463
Query 483 GTACAAAAGTCTCCTCTCACTTTCTATAACACAAATATTG 522
|||||||||||||| ||||||||||| | |||||| |||
Sbjct 464 -TACAAAAGTCTCCTTTCACTTTCTATTATACAAATGTTG 502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28532995496
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5