BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942876 Length=593 Score E Sequences producing significant alignments: (Bits) Value AT3G55680.1 | Symbols: | Plant invertase/pectin methylesterase... 274 7e-73 > AT3G55680.1 | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr3:20665685-20666315 REVERSE LENGTH=552 Length=552 Score = 274 bits (148), Expect = 7e-73 Identities = 402/520 (77%), Gaps = 36/520 (7%) Strand=Plus/Plus Query 21 ATGGCCACAATGTTCATCAAACACATCATGTTT-CCTTTGTCGTTGTTATTACTCTTGTT 79 |||||| ||||| ||||||||||| | | ||| |||| |||||||||| || || |||| Sbjct 1 ATGGCCTCAATGCTCATCAAACAC-TTAACTTTGCCTTCGTCGTTGTTAGTATTCGTGTT 59 Query 80 CATTGCGTCTCCAACT-ACAAACGCGATGCT-TATCAAAGACATGTATACATTTTGCAAG 137 | |||||| | | | | || | |||||| | |||||| |||||||| ||||||||||| Sbjct 60 CTTTGCGTTTAC-AGTCGCAGATGCGATG-TCTATCAAGGACATGTACGCATTTTGCAAG 117 Query 138 GAGACAGCA-GATGTGGACTTCTGCTTGAAATACATTGGAACGGACAAACGTATATTAGC 196 || |||| | || || |||||||||||||||||||||||||||||| |||||| ||||| Sbjct 118 GATACAG-ATGACGTCAACTTCTGCTTGAAATACATTGGAACGGACATACGTATCTTAGC 176 Query 197 CGCAAAAGACTTCAACGACGTTCTT-TTAATTGCGTTTTCTCAGTGCAAAATCCAAGTGA 255 |||| ||| || | || || ||| || ||||| ||||||| ||| |||||||| ||| Sbjct 177 CGCACGCGACCTCCATGATGTGCTTGTT-ATTGCAATTTCTCAATGCCAAATCCAATTGA 235 Query 256 GCGAGGCAACCAAACAAATCAACAAAGTCCGTCAAAACTTTAGTGGTCCGAATGGGAAAA 315 | ||||||||||||||||||||||||| || ||||| ||||||||||||| ||||| Sbjct 236 CCAAGGCAACCAAACAAATCAACAAAGTTCGCCAAAAGTTTAGTGGTCCGATTGGGACTC 295 Query 316 GACGAATCAAACGTTGTGAGATAA--ACTA-TGGGCTAGCTTCAGCTTTATTCGATGAAG 372 ||||| || | ||| | || || |||| || |||| || ||||| ||| | ||| Sbjct 296 GACGACTCTATTTTTGCG-GA-AAGCACTACTGTT-TAGCGTCTGCTTTCTTCCAA-AAG 351 Query 373 -CTTATGAA-ATAGGA-ATACTAA-AAGGGGTACAAAACAA-AGCTCA-CAATGCCGCAT 426 |||||||| | || | | | || ||||| | | | | | |||||| | | | ||| Sbjct 352 GCTTATGAAGA-AGCACA-AG-AAGAAGGGCT-CGAGTCCATAGCTCAGCTTT-CTGCAG 406 Query 427 TGGATGGCTTAGACTATGTGCGTGCA--TGCGAAGACGAATGGAAGA-TCAATGGTCC-A 482 ||||||||| | ||||| || | || |||||||| |||||||| | | ||||| || | Sbjct 407 TGGATGGCTCACACTATATGT-T-CAAATGCGAAGATGAATGGAAAAAT-AATGGACCGA 463 Query 483 GTACAAAAGTCTCCTCTCACTTTCTATAACACAAATATTG 522 |||||||||||||| ||||||||||| | |||||| ||| Sbjct 464 -TACAAAAGTCTCCTTTCACTTTCTATTATACAAATGTTG 502 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28532995496 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5