BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942877

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10595.1 | Symbols: LCR2 | low-molecular-weight cysteine-ric...   193    1e-48


> AT4G10595.1 | Symbols: LCR2 | low-molecular-weight cysteine-rich 
2 | chr4:6545340-6546401 FORWARD LENGTH=270
Length=270

 Score =  193 bits (104),  Expect = 1e-48
 Identities = 156/180 (87%), Gaps = 8/180 (4%)
 Strand=Plus/Plus

Query  132  CAAAGAAGACAAGTGAAACAAACATGGTGTTCTA-GAC-CT--TTA-CC-TAACCAAACT  185
            |||||||||||| |||| |||||||||||||||| | | ||  ||| || ||| ||||| 
Sbjct  82   CAAAGAAGACAAATGAACCAAACATGGTGTTCTAGGCCTCTACTTACCCATAAACAAACA  141

Query  186  GGGAAATGTATCATCGAAGAATATGAGTCTAAATGTAGGCAGAAGTGGAAAGGGAATGGT  245
            ||||||||| |||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct  142  GGGAAATGTGTCATCGAAGATTGTGAATCTAAATGTAGGCAGAAGTGGAAAGGGAATGGT  201

Query  246  ACAGAGGCTACATGTCGTCACCAATGCA-CTTGCCATTTTCGTTGCCCCTGGCTTCAAGG  304
            ||  |||||||||||||| |||| |||| || ||||||||||||| || ||| |||||||
Sbjct  202  ACTCAGGCTACATGTCGTAACCAGTGCAACT-GCCATTTTCGTTGTCCATGGATTCAAGG  260



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15583002190


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5