BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942886

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10695.1 | Symbols:  | CDC68-related | chr4:6593774-6594478 ...   302    2e-81


> AT4G10695.1 | Symbols:  | CDC68-related | chr4:6593774-6594478 
REVERSE LENGTH=705
Length=705

 Score =  302 bits (163),  Expect = 2e-81
 Identities = 271/320 (85%), Gaps = 20/320 (6%)
 Strand=Plus/Plus

Query  33   AACTTACCAAAGTGTAAGTTGTCCTTCCAGAC-GATTGCTTTCTCTTC-ATCCCCAACAT  90
            ||||| ||||||||| |||||||||| ||| | | |||||||||||||  |  || ||||
Sbjct  292  AACTTGCCAAAGTGTGAGTTGTCCTTTCAGGCTG-TTGCTTTCTCTTCGGT-ACCTACAT  349

Query  91   CGGGTATTTGTGCTGTAATAGCGTTAAGACCTTTGATGAGATATAGCGTCCGTAGT-AGC  149
            | |||| |||||| |||||||||||||||||||| | ||||| || | | |||| | |||
Sbjct  350  CAGGTACTTGTGCGGTAATAGCGTTAAGACCTTTTACGAGATTTATCATTCGTA-TAAGC  408

Query  150  ATTTGCTATCTTGGAGCAATTGAGTGGATTACTCAAGATTTTCCTTGCTCTCATGGATTT  209
            ||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct  409  ATTTGCTTTCCTGGAGCAACTGAGTGGATTACTCAAGATTTTTCTTGCTCTCATGGATTT  468

Query  210  GATCCATACATGCATAGCAACCTTTTCTATGCCAATGATCACTTCTATTGCTTCAGCTC-  268
            || || |||||||||||||| ||| |||||||||||| ||||||||||||||||||||| 
Sbjct  469  GAGCCGTACATGCATAGCAATCTTGTCTATGCCAATGGTCACTTCTATTGCTTCAGCTCG  528

Query  269  -G-GGTG--GTA-TT---TTAG-TC--G--TCCCGCACAATGAGTCATCAAGCATGGAAT  315
             | ||||   || ||   || | ||  |  ||||||||||||||||||||||||||||||
Sbjct  529  GGAGGTGTTTTAGTTGACTTTGATCTAGCTTCCCGCACAATGAGTCATCAAGCATGGAAT  588

Query  316  AAACATAGATGCCCTTATAT  335
             |||||| ||||||||||||
Sbjct  589  GAACATATATGCCCTTATAT  608



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15733805437


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5