BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942887

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10700.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   298    2e-80
  AT4G10660.1 | Symbols:  | CDC68-related | chr4:6582535-6583488 ...   278    2e-74


> AT4G10700.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: CDC68-related (TAIR:AT4G10660.1); Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr4:6597863-6598658 
REVERSE LENGTH=744
Length=744

 Score =  298 bits (161),  Expect = 2e-80
 Identities = 201/220 (91%), Gaps = 4/220 (2%)
 Strand=Plus/Plus

Query  1    CGAGATTGGATGTTCTTGGTATGAAGAACAGTGTGTACTTCCCAAAGTATGGTTTACATG  60
            ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || 
Sbjct  527  CGAGATTGGATGTTCTTGGGATGAGGAACAGTGTGTACTTCCCAAAGTATGGTTTAGATT  586

Query  61   GCAAAGGATGTGTATCCTACTCGTTTGATGAAGGTAGGTACTATCCGCGTAAGCAGCTT-  119
            |||| ||||||||||||||||||||||||||||  ||||||||||||||||||||| || 
Sbjct  587  GCAAGGGATGTGTATCCTACTCGTTTGATGAAGCCAGGTACTATCCGCGTAAGCAG-TTC  645

Query  120  CCAAAACCAACAATATGCCAAAAGCAGAAAGAACTATGCCCTCTTAGGAGTCTTTGGATC  179
            || ||||||||||| || |||| |||||||||||| ||||||||||||||||||||||||
Sbjct  646  CCTAAACCAACAATGTGGCAAATGCAGAAAGAACTTTGCCCTCTTAGGAGTCTTTGGATC  705

Query  180  GAGCCACCTTTTAAGGACATCTTAGACT-TGATGAAATGA  218
            |||||||| | ||||||||||||||| | |||| ||||||
Sbjct  706  GAGCCACCGTCTAAGGACATCTTAGA-TGTGATAAAATGA  744


> AT4G10660.1 | Symbols:  | CDC68-related | chr4:6582535-6583488 
FORWARD LENGTH=954
Length=954

 Score =  278 bits (150),  Expect = 2e-74
 Identities = 175/187 (94%), Gaps = 2/187 (1%)
 Strand=Plus/Plus

Query  1    CGAGATTGGATGTTCTTGGTATGAAGAACAGTGTGTACTTCCCAAAGTATGGTTTACATG  60
            ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || 
Sbjct  764  CGAGATTGGATGTTCTTGGGATGAGGAACAGTGTGTACTTCCCAAAGTATGGTTTAGATT  823

Query  61   GCAAAGGATGTGTATCCTACTCGTTTGATGAAGGTAGGTACTATCCGCGTAAGCAGCTTC  120
            |||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct  824  GCAAGGGATGTGTATCCTACTCGTTTGATGAAGCCAGGTACTATCCGCGTAAGCAGCTTC  883

Query  121  CAAAACCAACAATATGCCAAAAGCAGAAAGAACTATGCCCTCTTAGGAGTCTTTGGATCG  180
            |||||||||||||||| |||| |||||||||||| |||||||||||||||||  ||||||
Sbjct  884  CAAAACCAACAATATGGCAAATGCAGAAAGAACTTTGCCCTCTTAGGAGTCT--GGATCG  941

Query  181  AGCCACC  187
            |||||||
Sbjct  942  AGCCACC  948



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10757298286


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5