BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942896
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10750.1 | Symbols: | Phosphoenolpyruvate carboxylase famil... 1760 0.0
> AT4G10750.1 | Symbols: | Phosphoenolpyruvate carboxylase family
protein | chr4:6618676-6619939 FORWARD LENGTH=1264
Length=1264
Score = 1760 bits (953), Expect = 0.0
Identities = 1070/1126 (95%), Gaps = 10/1126 (1%)
Strand=Plus/Plus
Query 1 TACTTCCCAAGTTCACCGCCATGACCACCGCTTCAATCTTCCCCGCCGCCGTCG-TCGTC 59
||||||||||||||||||| ||| |||||||||||||||||||||||||||| | ||||
Sbjct 29 TACTTCCCAAGTTCACCGCAATGGCCACCGCTTCAATCTTCCCCGCCGCCGT-GACCGTC 87
Query 60 ACCACAGATGTGACACCTCTGT-TTAATCCATCTTCTCTGATCATCGGAAAATCATTATC 118
|||| |||||||||| |||| | ||||||||||||||||||| |||||||||||||||||
Sbjct 88 ACCAGAGATGTGACATCTCT-TCTTAATCCATCTTCTCTGATAATCGGAAAATCATTATC 146
Query 119 TACTTCAAAGTTTAGCTCAATCAGATCCTCAGTTTCATTCTCCCGCAAAACGCTAACTCC 178
| |||||||||| |||||||||| |||||| |||||||| ||||||||||| ||||||||
Sbjct 147 TCCTTCAAAGTTCAGCTCAATCAAATCCTCCGTTTCATTTTCCCGCAAAACCCTAACTCC 206
Query 179 AATCCGATACTCTTCGTCTCCCGCCGATCACTCACCCGTCGCCGCCGTGGAAGCGATCAC 238
||| ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 207 AATTCGATACTCTTCATCTCCCGCCGATCACTCACCCGCCACCGCCGTGGAAGCGATCAC 266
Query 239 GAACCGATCCAAAACCTCCTTGAAATCTCGTCTCCGTGGAGGAGAAACTCTCTACGGCCT 298
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 267 GAATCGATCCAAAACCTCCTTGAAATCTCGTCTCCGTGGAGGAGAAACTCTCTACGGTCT 326
Query 299 CTTTTTACTCTCCTTCTCGCCGACATTAGCCGAGATCGCTGCTCACGCCGGTTACGATTA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 CTTTTTACTCTCCTTCTCGCCGACATTAGCCGAGATCGCTGCTCACGCCGGTTACGATTA 386
Query 359 CGTCGTCGTTGACATGGAACACGGTCCCGGCGGCATACCGGAAGCTTTAGATTGTATTCG 418
|||||||||||| |||||||| |||||||| || |||||||||||||| |||||||||||
Sbjct 387 CGTCGTCGTTGATATGGAACATGGTCCCGGAGGTATACCGGAAGCTTTGGATTGTATTCG 446
Query 419 AGCTCTTAACGCCGCCGGAACATCAGCCATTCTCCGATTACCGGAAAACTC-CTCAACCT 477
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 447 AGCTCTTAACGCCGCCGGAACATCAGCCATTCTCCGATTACCGGAAAACTCAC-CAACCT 505
Query 478 GGGCTAAAAAAGCCCTAGATCTAGGTCCACAAGGAATCATGTTCCCAATGATCGAATCTC 537
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GGGCTAAAAAAGCTCTAGATCTAGGTCCACAAGGAATCATGTTCCCAATGATCGAATCTC 565
Query 538 GCAAAGACGCTACCAAAGCGGTGTCGTATTGCCGGTTTCCTCCCGACGGCATCCGTGGAT 597
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 566 GTAAAGACGCTACCAAAGCGGTGTCGTATTGCCGGTTTCCTCCCGACGGTATCCGTGGAT 625
Query 598 CGGCGCACACGGTGGTGCGAGCTTCAAACTACGGAATCGACGAAGGGTATTTAAGTAATT 657
||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||
Sbjct 626 CGGCGCACACGGTGGTGAGAGCTTCTAACTACGGAATCGATGAAGGGTATTTAAGTAATT 685
Query 658 ACGCAGAGGAGATTCTGATCATGTGCCAGGTGGAATCATCTGAAGGAGTGAAGAAAGCTG 717
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 686 ACGCAGAGGAGATTCTGATTATGTGCCAGGTGGAATCAGGTGAAGGAGTGAAGAAAGCTG 745
Query 718 ATGAAATCGCAGCCGTTGATGGTGTTGACTGTGTGCAAATGGGACCGTTGGATCTTAGTG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 ATGAAATCGCAGCCGTTGATGGTGTTGACTGTGTGCAAATGGGACCGTTGGATCTTAGTG 805
Query 778 CGAGTTTGGGGTATTTGTGGGATCCTGGACATAAGAAAGTGAGAGAGATGATGAAGAAAG 837
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 806 CGAGTTTAGGGTATTTGTGGGATCCTGGACATAAGAAAGTGAGAGAGATGATGAAGAAGG 865
Query 838 CTGAGAAATCTGTGCTGACGTCTGATCCGGCTAAAGGCGGGGCTTATTTGTCGGGTTTCG 897
||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 866 CTGAGAAATCTGTGCTGACCACTGATCCGGCGAAAGGCGGGGCTTACTTGTCGGGTTTCG 925
Query 898 CGATGCCGCATGACGGAGCTGTTGAGATCCGGGGACGTGGTTATCATATGGTCGCCGGAG 957
|||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 926 CGATGCCGCACGACGGAGCTGGTGAGATTCGGGGACGTGGTTACCATATGGTCGCCGGAG 985
Query 958 CTGTTGATGTTGGATTGTTTAGGAATGCTGCTGTTGAAGATGTGAGGAGATTCAAGATGG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 CTGTTGATGTTGGATTGTTTAGGAATGCTGCTGTTGAAGATGTGAGGAGATTCAAGATGG 1045
Query 1018 GTTTGGTCAATGAATCGGACGGTGAGGATTCGTTGGAACATGATAAAGATGTTGACGATG 1077
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||
Sbjct 1046 GTTTGGTCAATGAATCGGACAGTGAGGATTCGTCGGAACATGATAAAGATGTTGATGATG 1105
Query 1078 AGAAGTATTGGAGCGAATAA--AAA-TT-CAAATTTCGTTAATGTT 1119
||||||| |||||||||||| ||| || |||||||||||||||||
Sbjct 1106 AGAAGTACTGGAGCGAATAAGCAAAATTTCAAATTTCGTTAATGTT 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5