BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942897
Length=2110
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10760.1 | Symbols: EMB1706, MTA | mRNAadenosine methylase |... 3378 0.0
AT1G37010.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 84.2 5e-15
> AT4G10760.1 | Symbols: EMB1706, MTA | mRNAadenosine methylase
| chr4:6619817-6623351 REVERSE LENGTH=2227
Length=2227
Score = 3378 bits (1829), Expect = 0.0
Identities = 2016/2106 (96%), Gaps = 13/2106 (1%)
Strand=Plus/Plus
Query 1 AATTCTTTTGTTTCGAAGCCATGGAAACTGAATCGGATGACGCCACCATTACCGTCGTCA 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 20 AATTCTTTTGTTTCGAAGCCATGGAAACTGAATCTGATGACGCCACCATTACCGTCGTCA 79
Query 61 AAGACATGAGAGCTCGATTAGAGAATCGAATTCGAACCCAACACGACGCTCACTTAGATC 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 AAGACATGAGAGTTCGATTAGAGAATCGAATTCGAACCCAACACGACGCTCACTTAGATC 139
Query 121 TTCTTTCTTCACTCCAATCCATTGTTCCCGACATAGTCCCATCTCTCGATCTCTCACTCA 180
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 140 TCCTTTCCTCACTCCAATCCATTGTTCCCGATATAGTCCCATCTCTCGATCTCTCACTCA 199
Query 181 AACTCATCTCTTCTTTCACCAATCGACCTTTCGTCGCTACACCTCCATTACCCGAACCCA 240
||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||
Sbjct 200 AACTCATCTCTTCTTTCACGAATCGACCTTTCGTAGCTACACCACCATTACCAGAACCCA 259
Query 241 AAGTGGAGAAGAAGCATCATCCAATTGTTAAATCAGGAACCCAACAACAACAATTACATG 300
|||| ||||||||||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct 260 AAGTTGAGAAGAAGCATCATCCGATTGTTAAATTAGGAACCCAACTGCAACAATTACATG 319
Query 301 GGCATGATTCAAAATCGATGCTTGTTGATTCGAATCAGAGAGATTCTGGTTCTGGTGTTG 360
||||||||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 320 GGCATGATTCAAAATCGATGCTTGTTGATTCGAATCAGAGAGA---T-G--C------TG 367
Query 361 AAGCTGATGGGTCTAGTGGGAGTCCTATGGTGCTTGTTAGAGCTATGGTTGCTGAGTGTT 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 368 AAGCTGATGGGTCTAGTGGGAGTCCTATGGCGCTTGTTAGAGCTATGGTTGCTGAGTGTT 427
Query 421 TGCTTCAACGAGTACCGTTTTCGCCTACGGATTCGTCTACTGTGCTTAGGAAGCTTGAGA 480
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 428 TGCTTCAACGTGTACCGTTTTCTCCTACGGATTCTTCTACTGTGCTTAGGAAGCTTGAGA 487
Query 481 ATGACCAGAATGCGAGACCGGCGGAGAAGGCGGCGTTACGGGATTTAGGCGGTGAATGCG 540
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 488 ATGACCAGAATGCTAGACCGGCGGAGAAGGCGGCGTTACGAGATTTAGGCGGTGAATGTG 547
Query 541 GGCCGATTCTTGCGGTGGAAACCGCGCTTAAATCGATGGCGGAAGAGAATGGTTCTGTGG 600
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 548 GACCGATTCTTGCGGTGGAGACCGCACTTAAATCGATGGCGGAAGAGAATGGTTCTGTGG 607
Query 601 AATTGGAAGAGTTTGAGGTTAGTGGGAAGCCTAGAATCATGGTTTTGGCTATTGATAGAA 660
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 608 AATTGGAAGAGTTTGAGGTTAGTGGGAAGCCTAGGATCATGGTTTTAGCTATAGATAGAA 667
Query 661 CTAGATTGCTTAAAGAGTTACCAGAGAGTTTCCAGGGGAATAACGAATCGAATCGGGTTG 720
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 668 CTAGATTGCTTAAAGAGTTACCAGAGAGTTTCCAAGGGAATAACGAATCGAATCGGGTTG 727
Query 721 TCGAAACGCCTAATTTGGTTGAGAATTCAACGGTTTCTGCTGGCGGGTTTGGGGTTTCCG 780
||||||||||||||| |||||||| | || ||||||| |||||||||||| |||||||
Sbjct 728 TCGAAACGCCTAATTCAATTGAGAATGCTACTGTTTCTGGTGGCGGGTTTGGTGTTTCCG 787
Query 781 GGTCGGGTAATTTCCCGAGGCCTGAGATGTGGGGAGGTGATCCTAATATGGGGTTTAGGC 840
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 788 GGTCGGGTAATTTCCCGAGACCTGAGATGTGGGGAGGTGATCCTAATATGGGGTTTAGGC 847
Query 841 CGATGATGAATGCACCAAGAGGAATGCAAATGATGGGAATGCATCATCCAATGGGGATAA 900
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CAATGATGAATGCACCAAGAGGAATGCAAATGATGGGAATGCATCATCCAATGGGGATAA 907
Query 901 TGGGTAGACCACCACCGTTTCCTTTGTCTTTGCCGTTGCCTGTACCGTCGAATCAGAAGC 960
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 908 TGGGTAGACCACCACCATTTCCTTTGCCTTTGCCGTTGCCTGTACCGTCGAATCAGAAGC 967
Query 961 TTAGAAGCGAAGAAGATGATTTGAAAGACGTTGAAGCTCTTTTGAGTAAGAAGTCTTTTA 1020
||||||| || ||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 968 TTAGAAGTGAGGAAGAGGATTTGAAAGATGTTGAGGCTCTTTTGAGTAAGAAGTCTTTTA 1027
Query 1021 AGGAGAAGCAACAGTCAAGGACTGGTGAGGAGTTGCTTGACCTTATTCACCGTCCAACCG 1080
|||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1028 AGGAGAAGCAACAGTCTAGGACAGGTGAGGAGTTGCTTGATCTGATTCACCGTCCAACCG 1087
Query 1081 CTAAAGAAGCCGCTACCGCTGCTAAGTTTAAAAGCAAAGGAGGATCACAGGTTAAGTATT 1140
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 CTAAAGAAGCCGCTACTGCTGCTAAGTTTAAAAGCAAAGGAGGATCACAGGTTAAGTATT 1147
Query 1141 ACTGTAGGTATTTAACTAAAGAGGATTGCCGTCTTCAGTCTGGTTCTCACATAGCCTGCA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 ACTGTAGGTATTTAACTAAAGAGGATTGCCGTCTTCAGTCTGGTTCTCACATAGCCTGCA 1207
Query 1201 ACAAGAGACATTTCCGTCGACTAATCGCTTCACATACCGACGTTAGCCTAGGAGATTGTT 1260
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1208 ACAAGAGACATTTCCGTCGACTAATCGCTTCACATACTGACGTTAGCCTAGGAGATTGTT 1267
Query 1261 CCTTTCTCGATACTTGTCGTCACATGAAGACTTGCAAATACGTGCATTACGAGCTCGACA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 CCTTTCTCGATACTTGTCGTCACATGAAGACTTGCAAATACGTGCATTACGAGCTCGACA 1327
Query 1321 TGGCTGACGCTATGATGACTGGTCCAGACAAAGCATTGAAGCCACTGCGTGCTGATTACT 1380
||||||||||||||||| |||||||||| || ||||||||||| || |||||||||||||
Sbjct 1328 TGGCTGACGCTATGATGGCTGGTCCAGATAAGGCATTGAAGCCTCTACGTGCTGATTACT 1387
Query 1381 GTTCCGAAGCTGAACTTGGTGAAGCACAATGGATAAACTGCGATATCCGTTCTTTTCGAA 1440
|||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||
Sbjct 1388 GTTCTGAAGCTGAACTTGGTGAGGCACAATGGATTAACTGTGACATCCGTTCTTTTCGAA 1447
Query 1441 TGGACATTTTGGGAACTTTTGGAGTTGTTATGGCGGATCCACCATGGGACATTCACATGG 1500
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 TGGACATTTTGGGAACCTTTGGAGTTGTTATGGCGGATCCACCATGGGACATTCACATGG 1507
Query 1501 AACTTCCATATGGAACAATGGCTGATGACGAGATGCGCACTCTGAATGTTCCCTCGTTGC 1560
||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |
Sbjct 1508 AACTTCCATATGGAACAATGGCTGATGACGAAATGCGAACTCTTAATGTTCCCTCGTTAC 1567
Query 1561 AGACTGATGGTTTGATTTTCCTCTGGGTCACTGGTCGTGCAATGGAGCTAGGCCGTGAAT 1620
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1568 AGACTGACGGTTTGATTTTCCTCTGGGTCACTGGTCGTGCTATGGAACTAGGCCGTGAAT 1627
Query 1621 GTTTGGAGCTTTGGGGATACAAGCGAGTGGAAGAGATCATATGGGTAAAGACGAATCAGC 1680
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1628 GTTTGGAGCTTTGGGGATACAAGCGAGTGGAAGAGATCATATGGGTAAAGACAAATCAAC 1687
Query 1681 TTCAACGTATTATTCGAACAGGAAGAACAGGTCACTGGCTCAACCATAGCAAAGAACATT 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1688 TTCAACGTATTATTCGAACAGGAAGAACAGGTCACTGGCTCAACCATAGCAAAGAGCATT 1747
Query 1741 GTCTGGTTGGAATCAAAGGAAACCCAGAAGTGAACAGAAACATCGACACAGATGTGATTG 1800
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1748 GTCTGGTTGGAATCAAAGGAAATCCAGAAGTGAACAGAAACATCGACACAGATGTGATTG 1807
Query 1801 TTGCAGAGGTTAGAGAAACAAGCCGGAAGCCAGACGAGATGTATGCAATGTTAGAGAGGA 1860
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1808 TCGCAGAGGTTAGAGAAACAAGCCGGAAGCCAGACGAGATGTATGCAATGTTAGAGAGGA 1867
Query 1861 TCATGCCAAGAGCAAGAAAACTCGAGTTATTCGCTCGTATGCACAATGCTCATGCCGGAT 1920
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1868 TCATGCCAAGAGCAAGAAAGCTCGAGTTATTCGCCCGTATGCACAATGCTCATGCCGGAT 1927
Query 1921 GGCTATCACTTGGGAACCAGCTTAACGGTGTCCGATTAATAAACGAAGGTCTTCGAGCTC 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1928 GGCTATCACTTGGGAACCAGCTTAACGGTGTCCGATTAATAAACGAAGGTCTTCGAGCTC 1987
Query 1981 GGTTTAAAGCATCATACCCTGAAATAGATGTCCAGCCACCATCACCACCAAGAGCCTCTG 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1988 GGTTTAAAGCATCATACCCTGAAATAGATGTCCAGCCACCATCACCACCAAGAGCCTCTG 2047
Query 2041 CAATGGAAACAGAAAACGAACCAATGGCTATTGACTCAATCACAGCTTAGTTCAATTC-a 2099
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2048 CAATGGAAACAGACAACGAACCAATGGCTATTGACTCAATCACAGCTTAGTTCAATTCCA 2107
Query 2100 aaaaaa 2105
||||||
Sbjct 2108 AAAAAA 2113
> AT1G37010.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: spindle pole body component 98 (TAIR:AT5G06680.1);
Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:14040918-14041227
FORWARD LENGTH=264
Length=264
Score = 84.2 bits (45), Expect = 5e-15
Identities = 52/55 (95%), Gaps = 1/55 (2%)
Strand=Plus/Plus
Query 1629 CTTTGGGGATACAAGCGAGTGGAAGAGATCATATGGGTAAAGACGAATCAGCTTC 1683
|||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 57 CTTT-GGGATACAAACGAGTGGAAGAGATCATATGGGTAAAGACGAATCAACTTC 110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104617935780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5