BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942904

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10810.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   398    2e-110


> AT4G10810.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; 
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G24026.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr4:6645716-6646336 REVERSE LENGTH=621
Length=621

 Score =  398 bits (215),  Expect = 2e-110
 Identities = 250/267 (94%), Gaps = 1/267 (0%)
 Strand=Plus/Plus

Query  1    TCCAATCG-AACCGTGAAGCCATGGATAACAGCAGCAGCATCAATTCCACCGCTTCCACC  59
            |||||||| || || |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  85   TCCAATCGAAATCGAGAAGCCATGGATAACAGCAGCAGCATCAATTCCACCGCTTCCACG  144

Query  60   GCCTCAAATCTAAGCACGGCTTCCCTCGAAAAGCTAGATCAAGCGGCGAGCTGGGTCAGC  119
            ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  145  GCCTCAAATCTGAGCACGGCTTCTCTGGAAAAGCTAGATCAAGCGGCGAGCTGGGTCAGC  204

Query  120  ACCACCGTCATCTCTGCCTTCTTCGCCTCCCTTGAGCGTTGCTCATGCGTTAATCTATCT  179
            |||||||| || || ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct  205  ACCACCGTTATTTCCGCCTTCTTCGCCTCCCTCGAGCGTTGCTCATGCGTTAACCTATCT  264

Query  180  ACCTCCGATGATGATGATGACGGAGAAGAGTCTCACAACCGTCCCCTTGCTCTCTCCGCC  239
            |||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct  265  ACCTCCGATGATGACGATGAAGGCGAAGAATCTCACAACCGTCCCCTTGCTCTCTCCGCC  324

Query  240  GCTACTCACCCAGACGACATCGTTTAG  266
            ||| |||||||||||||||||||||||
Sbjct  325  GCTCCTCACCCAGACGACATCGTTTAG  351



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13170150238


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5