BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942912

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10890.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   364    2e-100


> AT4G10890.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); 
BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins 
in 780 species: Archae - 12; Bacteria - 1396; Metazoa 
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr4:6688833-6693761 
FORWARD LENGTH=1933
Length=1933

 Score =  364 bits (197),  Expect = 2e-100
 Identities = 242/263 (92%), Gaps = 5/263 (2%)
 Strand=Plus/Plus

Query  11    AAAGGAAGGTAAATGGCTGGACCGGGACAAGCGGCGAAGCAGTCAAGTGAAGTGCTAGGC  70
             ||| ||||| ||||||| ||||||| |||||| || ||||||||||||||||||||||||
Sbjct  1615  AAA-GAAGGGAAATGGCAGGACCGGCACAAGCAGCAAAGCAGTCAAGTGAAGTGCTAGGC  1673

Query  71    CAGCGGAAGTCGTTAGGGATATGTCCGTTGAGAGCAGCAGCGGTTGGAGCAGTGATAATC  130
             ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  1674  CAGCGGAAGTCGTTAGGGATATGTCCGTTGAGAGCGGCAGCGGTTGGAGCGGTGATAATC  1733

Query  131   GGTGGACTTGGCTACATGGTTTTGTATAGCAAGAAGAAGCCTGAAGCTTCAGCAGGTGAT  190
             |||||| |||||||  |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  1734  GGTGGAATTGGCTATGTGGTGTTGTACAGCAAGAAGAAGCCTGAAGCTTCAGCAGGTGAT  1793

Query  191   GTCGCTAAAGTTATGTCAGGCGTTGGTGGGACTCCTGAGAACACTCGTCCTCGTAACTGA  250
             ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct  1794  GTCGCTAAAGTTATGTCAGGCGTCGGTGGTACTCCTGAGAACACTCGTCCTCGTAATTGA  1853

Query  251   GCTTCT-TCTATATAATTT-TTT  271
             || ||| ||| | |||||| |||
Sbjct  1854  GCGTCTCTCT-T-TAATTTGTTT  1874



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12416134003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5