BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942912 Length=271 Score E Sequences producing significant alignments: (Bits) Value AT4G10890.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 364 2e-100 > AT4G10890.1 | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:6688833-6693761 FORWARD LENGTH=1933 Length=1933 Score = 364 bits (197), Expect = 2e-100 Identities = 242/263 (92%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 11 AAAGGAAGGTAAATGGCTGGACCGGGACAAGCGGCGAAGCAGTCAAGTGAAGTGCTAGGC 70 ||| ||||| ||||||| ||||||| |||||| || |||||||||||||||||||||||| Sbjct 1615 AAA-GAAGGGAAATGGCAGGACCGGCACAAGCAGCAAAGCAGTCAAGTGAAGTGCTAGGC 1673 Query 71 CAGCGGAAGTCGTTAGGGATATGTCCGTTGAGAGCAGCAGCGGTTGGAGCAGTGATAATC 130 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1674 CAGCGGAAGTCGTTAGGGATATGTCCGTTGAGAGCGGCAGCGGTTGGAGCGGTGATAATC 1733 Query 131 GGTGGACTTGGCTACATGGTTTTGTATAGCAAGAAGAAGCCTGAAGCTTCAGCAGGTGAT 190 |||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 1734 GGTGGAATTGGCTATGTGGTGTTGTACAGCAAGAAGAAGCCTGAAGCTTCAGCAGGTGAT 1793 Query 191 GTCGCTAAAGTTATGTCAGGCGTTGGTGGGACTCCTGAGAACACTCGTCCTCGTAACTGA 250 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| Sbjct 1794 GTCGCTAAAGTTATGTCAGGCGTCGGTGGTACTCCTGAGAACACTCGTCCTCGTAATTGA 1853 Query 251 GCTTCT-TCTATATAATTT-TTT 271 || ||| ||| | |||||| ||| Sbjct 1854 GCGTCTCTCT-T-TAATTTGTTT 1874 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12416134003 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5