BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942918
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10925.1 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 1112 0.0
> AT4G10925.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein | chr4:6702743-6704603 REVERSE LENGTH=1148
Length=1148
Score = 1112 bits (602), Expect = 0.0
Identities = 685/725 (94%), Gaps = 5/725 (1%)
Strand=Plus/Plus
Query 2 GAGAAAACTGGACAACAAACCTATGCCGTCGACGCCGCTGGCGAACGGTGTTTCGCCTCC 61
|||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 187 GAGAAAACTGGACAACAAACCTATGCCGTCGACGCCGCTGGCTAACGGTGGTACGCCTCC 246
Query 62 TCTGTGTGGCGGAGAGAGAACGGA-AGTTACGGCTTCCTCCACGGTGGCGGATGATAAGC 120
| || |||||||||||||||| || ||||| | | ||||||||||||||||||||||
Sbjct 247 TATGGGTGGCGGAGAGAGAAC-GACGGTTACAAC-T--TCCACGGTGGCGGATGATAAGC 302
Query 121 CTGGAGTTTCAATGATGGAACAGTTAGTTCCGGAAATTACAACCCACGCGCTTAGTTACT 180
|||||||||| |||||||| ||||| |||||||||||||| || ||||||||||||||||
Sbjct 303 CTGGAGTTTCGATGATGGAGCAGTTGGTTCCGGAAATTACGACACACGCGCTTAGTTACT 362
Query 181 TGGATTATCCTAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTA 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TGGATTATCCCAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTA 422
Query 241 ATGATGATAATGCTTGGAAAGCTCTTTATCACAAGGATTTTACGATGGAGCAAGATGGTA 300
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 423 ATGATGATAATGCTTGGAAAGCTCTTTATCACAAGGATTTTACTCTGGAGCAAGATGGTA 482
Query 301 TAACTCCAGTCAATGGGTGGAAAGCTTACTATGCAACTACTAGAGCGATTATTAGTGTCA 360
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 483 TAACACCAGTCAATGGGTGGAAAGAGTACTATGCAACTACTAGAGCGATTATTAGTGTGA 542
Query 361 ATACTGAATTCTTCAGCATCATTAGAGACAGAGCTCTTCAAGCGATGGCTCGTTTATGGT 420
|||| |||||||||| |||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 543 ATACGGAATTCTTCACCATCATTAGAGACAGAGCGCTTCAAGCGATGGCTCGGTTGTGGT 602
Query 421 TGAACTCGGACTATGTTAAGTGTATCCATGCCTCTGGTGAACTCTTCTCCGGGTACAATG 480
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 603 TGAACTCGGACTATGTCAAGTGTATCCATGCCTCTGGCGAACTCTTCTCCGGGTACAATG 662
Query 481 AAGTGATGCAAAGCTGGCAACTTTGTTTCAACTGGGAACAAGGGTTTGACTTTCAGGTCC 540
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 663 AAGTGATACAAAGCTGGCAACTTTGTTTCAATTGGGAACAAGGGTTTGACTTTCAGGTCC 722
Query 541 ACACGGTTCGCACTCGGATACTAACGGACATGGCTTGGGTCACCATGAAGGCATACCTGA 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 723 ACACGGTTCGCACTCGGATACTAACAGACATGGCTTGGGTCACCATGAAGGCATACCTGA 782
Query 601 ACGTGGACGGTGGTCCATTCCTGATAACCAATGTGTTTGAGTTCCATAATGGAAGGTGGC 660
||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 783 ACGTGGATGGTGGTCCATTCCTAATAACCAATGTGTTCGAGTTCCACAATGGAAGGTGGC 842
Query 661 ACATGGTTCATCATCACAGCTCAGTGATGCTGATCGATGATCAACAAGTTGTTGTTCATT 720
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 843 ACATGGTTCATCATCACAGCTCAGTGATGCTCATCGATGATCAACAAGTTGTTGTTCATT 902
Query 721 GATGA 725
|||||
Sbjct 903 GATGA 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36068117546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5