BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942919
Length=2993
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10930.1 | Symbols: | unknown protein; LOCATED IN: cellular... 4553 0.0
> AT4G10930.1 | Symbols: | unknown protein; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink). | chr4:6705147-6708846
REVERSE LENGTH=2986
Length=2986
Score = 4553 bits (2465), Expect = 0.0
Identities = 2819/2989 (94%), Gaps = 28/2989 (1%)
Strand=Plus/Plus
Query 21 ATGGAAACACAACCTGATACCTCACCAGTGGAGACAAGAAAGTCCCTGGATATTTCTGAG 80
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGACACAACCTGATACCTCACTAATGGAGACAAGAAAGTCCCTGGATATTTCTGAG 60
Query 81 AAGACAAATAGCGGATGCTCAGCAGAGGCTGTTTACTCTGGAAACTTTTCAGTTACAGTA 140
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGACAAATAGCGGATGCTCAGTAGAGGCTGTTTACTCTGGAAACTTTTCAGTTACAGTT 120
Query 141 GCTGATGAAGGCGAGACAGCTCTTGTTGTATCAATAGTCAAAGGAGACAAGTCTCATATG 200
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GCTGATGACGGCGAGACAGCTCTTGTTGTATCAATAGTCAAAGGAGACGAGTCTCATATG 180
Query 201 GAACCAAGTGATACCAACCCATTGCCAGTTGAAGCTAAAATGGATGGAGACCCAGATAGT 260
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 GGACCAAGTGATACCAACCCATTGCCAGTTCAAGCTAAAATGGATGGAGACCCAGATAGT 240
Query 261 TCGCATCTGAAAATTCTGTGTAGGGAGGAAAATACAGAACAGGTCCCAGTAAAATCGGAG 320
|||||||| |||||||| |||||||||||||||||||| |||||| |||| ||||||||
Sbjct 241 TCGCATCTTAAAATTCTTTGTAGGGAGGAAAATACAGAGCAGGTCGCAGTCAAATCGGAA 300
Query 321 CTCAAGCAGTCCTTACCACATGATATATCATCAAGACTATCTTCTGATTCATATCAACCA 380
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 CTCAACCAGTCCTTACCACATGATATATCATCAAGACTATCTTCTGATTCAGATCAACCA 360
Query 381 TTTTTTGCTGCAGACATGGAGAATAGAGCAGACCCTGTTGTAGAGAAGGACTGTCTGTCA 440
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 TTTTTTGCTGCAGACATAGAGAATAGAGCAGACCCTGTTGTAGAGAAGGATTGTCTGTC- 419
Query 441 G-TAGATGATAAAAATGATCTTTCCACTACAGCCATTTCCAATTCAGATGTT-CCTAGTG 498
| ||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 420 GATAGATGATAAAAAAAATCTTTCCACTGCAGCCATTTCCAATTCAGATGTTGCC-AGTG 478
Query 499 TTGTCAGCTTAAAGAGAAAGTATTCAGATTGCAGTGGGGATGATGGCAATTCAGAAACTA 558
| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 479 TCATCAGCTTAAAGAGAAAGCATTCAGATTGCAGTGGGGATGATGGCAACTCAGAAACTA 538
Query 559 AACCTGAGATTTACAAAGCTCTCAATAAACCAAAACTGGAGGAAGAGGAAGAATTAGCTA 618
|||||||||||||| || |||||||| ||| ||||||||||||||||||||||||| |||
Sbjct 539 AACCTGAGATTTACGAATCTCTCAATGAACTAAAACTGGAGGAAGAGGAAGAATTAACTA 598
Query 619 CCTTTCACCACGAGAGCAGATCCCCTTCAAACAATACAACTGTTGATATATTCAGCATTG 678
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CCGTTCACCACGAGAGCAGATCCCCTTCAAACAATACAACTGTTGATATATTCAGCATTG 658
Query 679 TCAAAGGAACTGGGCGTAGAAAAAATCTCATGCGTTCAAATCCTACTGATAAGTCTTCAG 738
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCAAAGGAACTGGCCGTAGAAAAAATCTCATGCGTTCAAATCCTACTGATAAGTCTTCAG 718
Query 739 AAGGAGAGAATGCTGCTGGTTTGAGGGTAAAGAAGATCAAGAGGACACCGGAGGACGAGC 798
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAGCAGAGAATGCTGCTGGTTTGAGGGTAAAGAAGATCAAGAGGACACCGGAGGACGAGA 778
Query 799 AAGAGTCAATTGTTCTGGTTGAGAAACTAAGGAAAGAAATAAGAGAAGCCGTACGTAACA 858
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 779 AAGAGTCAATGGTTCTGGTTGAGAAACTAAGGAAAGAAATAAGAGAAGCCGTTCGTAACA 838
Query 859 AATCGATGGAGGACATCACAGAAAACCAATTCGATCCAAAACTTTTGGCCGCCTTTAGAG 918
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 839 AATCGATGGAGGACATCAGAGAAAACCAATTCGATCCAAAACTTTTGGCTGCCTTTAGAG 898
Query 919 CTGCTGTGGCAGGACCTAAAACTGATGAAGCACCTAGAA-ATATTTCGGCTCTGGCAGTG 977
|||||||||||||||||||||||| |||||||||||||| | | ||| |||||||| |||
Sbjct 899 CTGCTGTGGCAGGACCTAAAACTGGTGAAGCACCTAGAAGA-AGTTCTGCTCTGGCTGTG 957
Query 978 AAGGCAAAGAAGTTGATGCTGCAAAAAGGAAAAGTCAGAGAGAATCTGACCAAGAAAATT 1037
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 958 AAGGCAAAGAAGTTGATGCTGCAGAAAGGAAAAGTCAGAGAGAATCTGACGAAGAAAATT 1017
Query 1038 TATGCAGATTTAAATGGGAAGCGGAAGAGTGCATGGCACCGGGACTGTGAAGTTGAGTTT 1097
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1018 TATGCAGATTTAAATGGGAAGCGAAAAAGTGCATGGCACCGGGACTGTGAAGTTGAGTTT 1077
Query 1098 TGGAAGCATCGGTGCATACAAAGTAGAAAGCCTGAAAAAATTGAAACTCTGAAGTCTGTT 1157
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGGAAGCATCGGTGCATACAAGGTAGAAAGCCTGAAAAAATTGAAACTCTGAAGTCTGTG 1137
Query 1158 CTTAGCCTCTTGAAGAAGAAACCAGGTGATGCCAAAACAAACTTTTCATCTGAAACCCCA 1217
||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1138 CTTAGCCTCTTGAAGAATAAACCAGCTGACACCAAAACAAACTTTTCATCTGAAACCCCA 1197
Query 1218 CAGGCCTCAAATCCTATCCTCTCCAGATTGTATTTGGCAGATACCTCCGTGTTCCCGAGA 1277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1198 CAGGCCTCAAATCCTATCCTCTCCAGATTGTATTTGGCAGATACCTCCGTGTTCCCAAGA 1257
Query 1278 AATGATAATCTCAAGCCTCTGTTGGCACCAAAAGAAACGGGAAACTCACAAAACAATGCA 1337
|||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| |
Sbjct 1258 AATGATAATCTCAAGCCTCTTTTGGCACCGAAAGAAATGGGAAACTCACAAAACAATGGA 1317
Query 1338 AAACCCACAGAAGCCAACAAAACTTTACCAAAGATTAGTGATGCCAAGGGGAGCAGGT-T 1396
|||||||||||||||| ||| || |||||||| ||||||| |||||||||||||| || |
Sbjct 1318 AAACCCACAGAAGCCAGCAAGACCTTACCAAAAATTAGTGCTGCCAAGGGGAGCA-GTGT 1376
Query 1397 AAAAGCTGCTGGATCAAAACTGAACTCAGGAAACAAACAGTCGGATGGGCAACCTAATCT 1456
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1377 AAAAGCTGCTGGATCAAAACTGAACTCAGGAAACAAACAGTCGGATGGGCAACCCAATCT 1436
Query 1457 TACATCGAGTAATTCTAAGGAAATGTTTGACATTCCTGACGATCTCAAGAAAGACAAAAG 1516
|||||| ||||| |||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct 1437 TACATCAAGTAACTCTAAGGAAATGGTTGAAAATCCTGACGATCTCAAGAAAGACAAAAG 1496
Query 1517 GAAATGGGCATTGCAGGTTCTTGCAAGAAAGAAAGCTTTAGCTGGCAACAACTCAACCCA 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 GAAATGGGCATTGCAGGTTCTTGCAAGAAAGAAAGCTTTAGCTGGCAACAACTCAACCCA 1556
Query 1577 AGATAGAGAAGGCTCTCCCGAGCTCAAAGGGAATTATCCATTGTTGGCTCAACTTCCAGC 1636
||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1557 AGACAAAGAAGGCTCTCCCGAGCTTAAAGGGAATTATCCATTGTTGGCTCAACTTCCAGC 1616
Query 1637 TGATATGAGACCAAGCCTTGCAACCAGTCGCCATAATAAAGTTCCTGTTGCAGTTAGACA 1696
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 1617 TGATATGAGACCAAGCCTTGCAACTAGTCGCCATAATAAAGTTCCTGTGGCAGTTAGGCA 1676
Query 1697 GACACAATTATATCGCCTGACAGAACATTTCTTAAAGAAAGAAAACCTTCTGTCTGTTCG 1756
|||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 1677 GACACAATTATATCGCCTGACAGAACATTTATTAAAGAAAGAAAACCTTCTGACTATTCG 1736
Query 1757 AAGAAGTGCAGCAACAGAACTAGCCGTTGCTGATGCTATAAATATCGAGAAAGCGATCGC 1816
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1737 AAGAAGTGCAGCGACAGAACTAGCCGTTGCTGATGCTATAAATATCGAGAAGGCGATTGC 1796
Query 1817 TGACAAATCAAGTAGCAAAGTTGTGTATCTGAATCTATGCTCACAAGAAATACTGCATCA 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 TGACAAATCAAGTAGCAAAGTTGTGTATCTGAATCTATGCTCACAAGAAATACTGCATCA 1856
Query 1877 TTCAGAGAGCAAAGCGATGGATAATGCTGTAGAACCGAATTCGTCATCACCAATGGCTGT 1936
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1857 TTCAGAGAGCAAAACGATGGATAATGCTGTAGAACCAAATTCGTCATCACCAATGGCTGA 1916
Query 1937 TAACGAGACAGAACGTATTAGTGGTAAAGATTCAGATGATCCCGCCGTCCTTGAAGCGCT 1996
|| ||| |||||||||| ||| |||||||||||||| |||| |||||||||||||||||
Sbjct 1917 TAGTGAGTCAGAACGTATAAGTAGTAAAGATTCAGATAATCCAGCCGTCCTTGAAGCGCT 1976
Query 1997 CAGAGCAGCAGGTCTTGCTGATTCACCACCAAACAGCCCAACCCGTTCAACAGAAGTTCC 2056
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1977 CAGAGCAGCAGGTCTTGCTGATTCACCACCAAACAGCCCGACCCGTTCAGTAGAAGTTCT 2036
Query 2057 TCCAGAGAAAGGAGACAGTTTCTTGGACAA-AGCAAGG-G-CAGGCCCAGATAATGTACT 2113
|||||||||||||||||||| ||||||||| | || || | |||||||| |||||||| |
Sbjct 2037 TCCAGAGAAAGGAGACAGTTCCTTGGACAAGACCAGGGAGACAGGCCCATATAATGTATT 2096
Query 2114 TGACTTAGATTCCGTTCCTGATACAGACATCTTTGGGGATTTTGAGTATGAATTGGATGA 2173
|||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2097 TGACATGGATTCTGTTCCTGATACAGACATCTTTGGGGATTTTGAATATGAATTGGATGA 2156
Query 2174 AGGAGATTATATGGGTGCTACCATGACTACAAAAGCTTCAGTAACGCAGCCGGATGAAAG 2233
|| ||| ||| | |||||||| ||| ||| |||||||||||||| |||||||||||||||
Sbjct 2157 AGAAGACTATTTCGGTGCTACAATGGCTAAAAAAGCTTCAGTAATGCAGCCGGATGAAAG 2216
Query 2234 CCTGACTAAGGTGAAGGTAGTTTTATCCACTGTTCAACCTGGAAAGTCTTTGAATCAATC 2293
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2217 CTTGACTAAGGTGAAGGTAGTTTTATCCACTGTTCAACCTGGAAAGTCTTTGAATCCATC 2276
Query 2294 TGAAGTCGT-GGGTGATGAAGAGACAACAACTGAAAACCAGAAGGAGATCACAAATGGCA 2352
|||||||| | | ||||||||||||||||||||||||| ||| |||| ||||||||| |
Sbjct 2277 CGAAGTCGTAGAG-GATGAAGAGACAACAACTGAAAACCTGAACGAGACCACAAATGGAA 2335
Query 2353 AAGAAGATGGAAAGAGCTTTGTTCCTATGGAGCCTGTACCCGAGGCCGAGGGTgaaggag 2412
||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||
Sbjct 2336 AAGAAGATGGAAAGAGCTTTGTTCCTATGGAGCTTGTACCTGAGGCTGAGGGAGAAGGAG 2395
Query 2413 aaggagaaggagaaggagaaggagaa-g-g-a---ggaggTGAGATCCTTTCTGTAGCTG 2466
|||||||||||||||||||||||||| | | | |||||||||||||||||||||||||
Sbjct 2396 AAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGGGGAGGTGAGATCCTTTCTGTAGCTG 2455
Query 2467 AATGTGAAGAACTATACGGACCTGGTACAGAGAAACTAGTTGAGAA-ACCTCTCATTGAA 2525
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||
Sbjct 2456 AATGTGAAGAACTATACGGACCTGGTACAGAGAAACTAGTTGA-AAGACCTCTCATCGAA 2514
Query 2526 GGATTTGATGAGAATGGTGTTAAAGCTAAAGCACCTGATTCAGAGTGCGAGAGCCACACA 2585
||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 2515 GGATTTGCTGAGAATGGTGTTAAAGCTAAAGCCCCTGATTCAGAGTGCGAGAGCAACACA 2574
Query 2586 CACAGAGAGTTCATCGCTTCAAACTTTGAAATCCCTTCCATTCAAGAGAAAAAACTTCCC 2645
|| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 2575 CAGAGAGAGTTCATCGCTTCAAACTTTGAAATCACTTGCATTCAAGAGAAAAAACTTCCC 2634
Query 2646 AGAAGCATTCAAAAGTGCAAACCAAGCGAAAAGCAGTCTAAAGAGGAAAAAGGCAAAGCT 2705
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2635 AGAAGCATTCAAAAGTGCAAACCAAGCGAAAAGCCGTCTAAAGAGGAAAAAGGCAAAGCT 2694
Query 2706 GATGGGTTTGGTAACTCCATCACCAAGAAGGTGGAAATATACATCAAAGAACATATCAGA 2765
||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 2695 GATGGCTTTGGTAACTCCATCACCAAGAAGGTGGAAGCATACATCAAAGAACATATTAGA 2754
Query 2766 CCACTGTGCAAGAGCGGAGTGATAAACGTGGAACAATACAGATGGGCAGTGACGAAAACC 2825
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2755 CCACTGTGCAAGAGCGGAGTGATAAACGTGGAACAATACAGATGGGCAGTGACTAAAACC 2814
Query 2826 ACAGAGAAAGTGATGAAGTATCATAGCAAAGCCAAGAGTGCTAACTTCTTGATCAAAGAA 2885
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2815 ACAGAAAAAGTGATGAAGTATCATAGCAAAGCCAAGAGTGCTAACTTCTTGATCAAAGAA 2874
Query 2886 GGAGACAAGATCAAGAAACTTGCCGAGCAATACGTCGAAACCGCTTCCTCTGGAGCTCAC 2945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2875 GGAGACAAGATCAAGAAACTTGCCGAGCAATACGTCGAAACCGCTTCCTCTGGAGCTCAC 2934
Query 2946 CACAAGGACAAG-GACAAGGGCAAATGACAATCAAATG-CGTAAATAAG 2992
|||||||| ||| | |||| | | | | ||||| ||| ||||||||||
Sbjct 2935 CACAAGGATAAGTG-CAAGTG-AGA--A-AATCAGATGGCGTAAATAAG 2978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148795152938
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5