BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942922
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10960.1 | Symbols: UGE5 | UDP-D-glucose/UDP-D-galactose 4-e... 1520 0.0
AT4G10955.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1520 0.0
> AT4G10960.1 | Symbols: UGE5 | UDP-D-glucose/UDP-D-galactose 4-epimerase
5 | chr4:6713557-6718550 REVERSE LENGTH=2827
Length=2827
Score = 1520 bits (823), Expect = 0.0
Identities = 1003/1091 (92%), Gaps = 8/1091 (1%)
Strand=Plus/Plus
Query 2 ACAGAAGAAGGGGAAAGGAATGATGATTTGTGAAAGAGATGATTTCAGTCTCACTGGACC 61
||||||||| | |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1536 ACAGAAGAA-GAGAAAGGAATGATGATTAGTGAAAGAGATGATTTTAGTCTCACTGGACC 1594
Query 62 ATTACACTTAACATCCATAGATTGGGCTAATGAACATCATCGGCGATCCGTAGCTGGCTC 121
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1595 ATTACACTTAACATCTATAGATTGGGCTAATGAACATCATCGACGATCCGTAGCTGGATC 1654
Query 122 ATTGGTTCAGGGAATCTATGTAGCTGAGCGTGATCGTCAACTACAAAGGGACGGTCCTGA 181
|||||||| ||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 1655 TTTGGTTCAAGGAATCTATGTAGCTGAGCGTGACCGTCAGCTACAAAGAGAAGGTCCTGA 1714
Query 182 ACTAGCTTTGTCTCCAATATGGTCTGAGTTTTTTCATTTTCGCCTCATTCGAAAGCTTGT 241
||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| ||||
Sbjct 1715 GTTAGCTTTATCTCCAATATGGTCTGAGTTTTTCCATTTCCGCCTCATTCGTAAGTTTGT 1774
Query 242 CGATGATGCGGATAACTCTATCTTCGGAGGAATCTATGAGTATAAACCGCCGCAACTA-A 300
|||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 1775 CGATGACGCGGATAACTCTATCTTCGGAGGAATCTATGAGTACAAACTGCCGCAAC-AGC 1833
Query 301 TCTCTCAAACTGTCAAATCTTTGGAACTGAGTCCGCGTTTTGTGGTTGCTTTCAGAGGAA 360
|||||||||| |||||||| ||||| | ||||| ||||||||| |||||||||||||||
Sbjct 1834 TCTCTCAAACCGTCAAATCAATGGAATTTAGTCCACGTTTTGTGATTGCTTTCAGAGGAA 1893
Query 361 CAGTTACAAAAGTGGACTCTATTTCCCGTGACATTGAGCATGACATCCATGTTATCAGAA 420
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 1894 CGGTTACAAAAGTGGACTCCATTTCCCGTGACATCGAGCATGACATCCATGTTATTAGAA 1953
Query 421 ACGGGCTTCACACGACAACACGGTTTGAGATAGCTATCCAAGCTGTGAGAAATATTGTTG 480
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1954 ACGGGCTTCACACGACAACACGGTTTGAGATAGCTATCCAAGCAGTGAGAAACATTGTTG 2013
Query 481 CTTCGGTTGGTGGTTCTAATGTGTGGCTTGCTGGTCATTCTCTTGGTGCATCCATGGCAT 540
|||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 2014 CTTCGGTTGGTGGTTCTAGTGTTTGGCTTGCTGGTCATTCTCTTGGTGCATCTATGGCAT 2073
Query 541 TACTTACCGGAAAAACAATCGCTAGAACCGGAGTTTTT-CCTGAGTGTTTCGCCTTCAAT 599
|||||||||| ||||| |||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 2074 TACTTACCGGGAAAACCATCGCTAGAACCGG-GTTTTTTCCTGAGTGTTTCGCATTCAAT 2132
Query 600 CCGCCGTTTTTGTCTGCCCCTATCGAAAAAATCAAGGATAAGAGGATCAAACACGGGATT 659
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 2133 CCGCCGTTTTTGTCTGCCCCTATCGAAAAAATTAAGGATAAGAGGATTAAACATGGGATA 2192
Query 660 CGTATCGCAGGAAGTGTGATCACAGCTGGACTTGCTCTAGCCAAAAAAGCCACCCAACAA 719
|| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2193 CGCATTGCAGGCAGTGTGATCACAGCTGGACTTGCTCTAGCCAAAAAAGCCACCCAACAC 2252
Query 720 TACAGCCAAAACGACCGTGCATCACCCGCAACACCCGATCCATTT-ACCGCCTTATCCGA 778
|||||||||||||||||||||| ||||||| | || ||||||||| | || ||||||||
Sbjct 2253 TACAGCCAAAACGACCGTGCATTACCCGCACCTCCTGATCCATTTGAA-GCTTTATCCGA 2311
Query 779 CTGGTTTCCGCGGCTGTACATCAACCCTGGAGACCATTTGTGCTCAGAATATATCGGTTA 838
|||||| ||||||||||| |||||||||| ||||| || |||||||| ||| | |||||
Sbjct 2312 CTGGTTCCCGCGGCTGTATGTCAACCCTGGTGACCACTTATGCTCAGAGTATGTTGGTTA 2371
Query 839 CTTCGAGCACCGAAGCAAGATGGAAGAAATCGGGATCGGGTTTGTCGAGCGGGTAGCGAC 898
||| |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 2372 CTTTGAGCACCGAAACAAGATGGAAGAAATCGGGATTGGGTTTGTAGAGCGGGTAGCGAC 2431
Query 899 ACAACACTCGTTGGGCGGTATGCTGTTAGGAGGAAAAGAGCCGGTACATCTGATTCCATC 958
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2432 GCAGCACTCGTTGGGCGGTATGCTGTTAGGAGGACAAGAGCCGGTACATCTGATTCCATC 2491
Query 959 TTCGGTTTTAACGGTGAACTTAAGCTCGTCAAGAGATTTCAAACAAGCTCATGGGATTCA 1018
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2492 TTCGGTTTTGACGGTGAACTTAAGCTCCTCGAGAGATTTCAAACAAGCTCATGGGATTCA 2551
Query 1019 TCAGTGGTGGAGAGAAGATCAGAAGTTTGAGACCAAAGTCTACCAGTACAAATGATTATG 1078
|||||||||||| |||||| | ||||||||||| ||||| ||||||||||||||||| ||
Sbjct 2552 TCAGTGGTGGAGGGAAGATAACAAGTTTGAGACTAAAGTTTACCAGTACAAATGATT-TG 2610
Query 1079 TATCAGTTTTT 1089
|||||||||||
Sbjct 2611 TATCAGTTTTT 2621
> AT4G10955.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:6713557-6718555 REVERSE LENGTH=2749
Length=2749
Score = 1520 bits (823), Expect = 0.0
Identities = 1003/1091 (92%), Gaps = 8/1091 (1%)
Strand=Plus/Plus
Query 2 ACAGAAGAAGGGGAAAGGAATGATGATTTGTGAAAGAGATGATTTCAGTCTCACTGGACC 61
||||||||| | |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1458 ACAGAAGAA-GAGAAAGGAATGATGATTAGTGAAAGAGATGATTTTAGTCTCACTGGACC 1516
Query 62 ATTACACTTAACATCCATAGATTGGGCTAATGAACATCATCGGCGATCCGTAGCTGGCTC 121
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1517 ATTACACTTAACATCTATAGATTGGGCTAATGAACATCATCGACGATCCGTAGCTGGATC 1576
Query 122 ATTGGTTCAGGGAATCTATGTAGCTGAGCGTGATCGTCAACTACAAAGGGACGGTCCTGA 181
|||||||| ||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 1577 TTTGGTTCAAGGAATCTATGTAGCTGAGCGTGACCGTCAGCTACAAAGAGAAGGTCCTGA 1636
Query 182 ACTAGCTTTGTCTCCAATATGGTCTGAGTTTTTTCATTTTCGCCTCATTCGAAAGCTTGT 241
||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| ||||
Sbjct 1637 GTTAGCTTTATCTCCAATATGGTCTGAGTTTTTCCATTTCCGCCTCATTCGTAAGTTTGT 1696
Query 242 CGATGATGCGGATAACTCTATCTTCGGAGGAATCTATGAGTATAAACCGCCGCAACTA-A 300
|||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 1697 CGATGACGCGGATAACTCTATCTTCGGAGGAATCTATGAGTACAAACTGCCGCAAC-AGC 1755
Query 301 TCTCTCAAACTGTCAAATCTTTGGAACTGAGTCCGCGTTTTGTGGTTGCTTTCAGAGGAA 360
|||||||||| |||||||| ||||| | ||||| ||||||||| |||||||||||||||
Sbjct 1756 TCTCTCAAACCGTCAAATCAATGGAATTTAGTCCACGTTTTGTGATTGCTTTCAGAGGAA 1815
Query 361 CAGTTACAAAAGTGGACTCTATTTCCCGTGACATTGAGCATGACATCCATGTTATCAGAA 420
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 1816 CGGTTACAAAAGTGGACTCCATTTCCCGTGACATCGAGCATGACATCCATGTTATTAGAA 1875
Query 421 ACGGGCTTCACACGACAACACGGTTTGAGATAGCTATCCAAGCTGTGAGAAATATTGTTG 480
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1876 ACGGGCTTCACACGACAACACGGTTTGAGATAGCTATCCAAGCAGTGAGAAACATTGTTG 1935
Query 481 CTTCGGTTGGTGGTTCTAATGTGTGGCTTGCTGGTCATTCTCTTGGTGCATCCATGGCAT 540
|||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1936 CTTCGGTTGGTGGTTCTAGTGTTTGGCTTGCTGGTCATTCTCTTGGTGCATCTATGGCAT 1995
Query 541 TACTTACCGGAAAAACAATCGCTAGAACCGGAGTTTTT-CCTGAGTGTTTCGCCTTCAAT 599
|||||||||| ||||| |||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 1996 TACTTACCGGGAAAACCATCGCTAGAACCGG-GTTTTTTCCTGAGTGTTTCGCATTCAAT 2054
Query 600 CCGCCGTTTTTGTCTGCCCCTATCGAAAAAATCAAGGATAAGAGGATCAAACACGGGATT 659
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 2055 CCGCCGTTTTTGTCTGCCCCTATCGAAAAAATTAAGGATAAGAGGATTAAACATGGGATA 2114
Query 660 CGTATCGCAGGAAGTGTGATCACAGCTGGACTTGCTCTAGCCAAAAAAGCCACCCAACAA 719
|| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2115 CGCATTGCAGGCAGTGTGATCACAGCTGGACTTGCTCTAGCCAAAAAAGCCACCCAACAC 2174
Query 720 TACAGCCAAAACGACCGTGCATCACCCGCAACACCCGATCCATTT-ACCGCCTTATCCGA 778
|||||||||||||||||||||| ||||||| | || ||||||||| | || ||||||||
Sbjct 2175 TACAGCCAAAACGACCGTGCATTACCCGCACCTCCTGATCCATTTGAA-GCTTTATCCGA 2233
Query 779 CTGGTTTCCGCGGCTGTACATCAACCCTGGAGACCATTTGTGCTCAGAATATATCGGTTA 838
|||||| ||||||||||| |||||||||| ||||| || |||||||| ||| | |||||
Sbjct 2234 CTGGTTCCCGCGGCTGTATGTCAACCCTGGTGACCACTTATGCTCAGAGTATGTTGGTTA 2293
Query 839 CTTCGAGCACCGAAGCAAGATGGAAGAAATCGGGATCGGGTTTGTCGAGCGGGTAGCGAC 898
||| |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 2294 CTTTGAGCACCGAAACAAGATGGAAGAAATCGGGATTGGGTTTGTAGAGCGGGTAGCGAC 2353
Query 899 ACAACACTCGTTGGGCGGTATGCTGTTAGGAGGAAAAGAGCCGGTACATCTGATTCCATC 958
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2354 GCAGCACTCGTTGGGCGGTATGCTGTTAGGAGGACAAGAGCCGGTACATCTGATTCCATC 2413
Query 959 TTCGGTTTTAACGGTGAACTTAAGCTCGTCAAGAGATTTCAAACAAGCTCATGGGATTCA 1018
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2414 TTCGGTTTTGACGGTGAACTTAAGCTCCTCGAGAGATTTCAAACAAGCTCATGGGATTCA 2473
Query 1019 TCAGTGGTGGAGAGAAGATCAGAAGTTTGAGACCAAAGTCTACCAGTACAAATGATTATG 1078
|||||||||||| |||||| | ||||||||||| ||||| ||||||||||||||||| ||
Sbjct 2474 TCAGTGGTGGAGGGAAGATAACAAGTTTGAGACTAAAGTTTACCAGTACAAATGATT-TG 2532
Query 1079 TATCAGTTTTT 1089
|||||||||||
Sbjct 2533 TATCAGTTTTT 2543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5