BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942923
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10960.1 | Symbols: UGE5 | UDP-D-glucose/UDP-D-galactose 4-e... 1724 0.0
AT4G10955.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1260 0.0
AT4G23920.1 | Symbols: UGE2, ATUGE2 | UDP-D-glucose/UDP-D-galac... 1061 0.0
> AT4G10960.1 | Symbols: UGE5 | UDP-D-glucose/UDP-D-galactose 4-epimerase
5 | chr4:6713557-6718550 REVERSE LENGTH=2827
Length=2827
Score = 1724 bits (933), Expect = 0.0
Identities = 1040/1092 (95%), Gaps = 6/1092 (1%)
Strand=Plus/Plus
Query 7 TCTGTTTCGTAACTATGATGGCTAAG-AACGTTCTAGTAACCGGTGGTGCTGGATACATC 65
|||||||||| | ||||||||| || ||||||||||||| |||||||||||||||||||
Sbjct 68 TCTGTTTCGT-A--ATGATGGCT-AGAAACGTTCTAGTAAGCGGTGGTGCTGGATACATC 123
Query 66 GGTAGTCACACGGTGCTTCAACTTCTTCTCGGTGGTTACTCCGTCGTAGTTGTTGATAAT 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 GGTAGTCACACGGTGCTTCAACTTCTTCTCGGTGGTTACTCCGTCGTAGTTGTTGATAAT 183
Query 126 CTCGATAATTCCTCAGCCGTCTCTCTTGAACGTGTGAAGAAACTCGCCGCCGAACACGGC 185
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 184 CTCGATAATTCCTCCGCCGTCTCTCTTCAACGTGTGAAGAAACTCGCGGCTGAACACGGA 243
Query 186 CAACGCCTCTCCTTCCACCAGGTGGATCTTCGAGACAAGCCTGCTCTTGAGAAGATATTC 245
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 244 GAACGCCTCTCCTTCCACCAGGTGGATCTTCGAGACAGGTCTGCTCTTGAGAAGATATTC 303
Query 246 TCAGAAACTAAGTTTGATGCAGTGATACATTTTGCTGGACTTAAAGCAGTTGGTGAGAGT 305
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TCAGAAACAAAGTTTGATGCAGTGATACATTTTGCTGGACTTAAAGCAGTTGGTGAGAGT 363
Query 306 GTAGAGAAGCCTTTGCTCTATTATAATAATAATCTTGTTGGGACTATTACTCTTTTGGAA 365
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 364 GTAGAGAAGCCTTTGCTTTATTATAATAATAATCTTGTTGGTACTATTACTCTTTTGGAA 423
Query 366 GTTATGGCTCAACATGGCTGCAAAAATCTTGTGTTTTCATCATCAGCCACTGTGTATGGC 425
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 424 GTTATGGCTCAACATGGCTGCAAAAATCTTGTGTTTTCATCATCAGCAACTGTGTATGGC 483
Query 426 TCTCCAAAGGAAGTTCCTTGTACAGAGGAGTTTCCGATTTCAGCATTGAACCCATATGGA 485
|||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 484 TCTCCAAAAGAAGTTCCTTGTACAGAGGAGTTTCCAATTTCTGCTTTGAACCCATATGGA 543
Query 486 CGAACAAAGCTATTCATTGAGGAAATCTGCCGTGATGTATACGGTTCTGACCCGGAATGG 545
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 544 CGAACAAAGCTATTCATTGAGGAAATCTGCCGCGATGTATACGGTTCTGACCCGGAATGG 603
Query 546 AAGATCATATTGCTTAGGTATTTTAATCCTGTTGGTGCACATCCTAGTGGTGAAATTGGT 605
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 604 AAGATTATATTGCTTAGGTATTTCAATCCTGTTGGTGCACATCCTAGTGGTGACATTGGT 663
Query 606 GAAGATCCTCGCGGTGTTCCCAACAATCTTATGCCTTTTGTACAACAAGTCGCTGTTGGT 665
||||| ||||| ||| |||| |||||||| ||||| |||||||||||||| |||||||||
Sbjct 664 GAAGACCCTCGTGGTATTCCAAACAATCTCATGCCCTTTGTACAACAAGTGGCTGTTGGT 723
Query 666 AGGAGACCTCATCTAACTGTCTTTGGAAATGATTACAATACAAAAGATGGAACAGGGGTT 725
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 AGGAGACCTCATCTCACTGTCTTTGGAAATGATTACAATACAAAAGATGGAACAGGGGTT 783
Query 726 CGAGATTACATTCATGTTATTGATTTAGCTGATGGACACATAGCGGCTTTGCGTAAGCTA 785
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 784 CGAGATTACATTCATGTTATTGATTTAGCTGATGGACACATAGCGGCTCTACGTAAGCTA 843
Query 786 GAAGATTGCAAAATCGGTTGTGAAGTGTACAATCTCGGAACAGGAAATGGAACATCGGTT 845
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 844 GAAGATTGCAAGATCGGTTGTGAAGTGTACAATCTCGGAACAGGAAATGGAACATCAGTT 903
Query 846 CTTGAAATGGTTGATGCCTTTGAAAAAGCGTCCGGGAAGAAAATCCCTCTGGTGATCGCT 905
||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 904 CTTGAAATGGTTGATGCTTTTGAAAAAGCATCCGGAAAGAAAATCCCTCTGGTGATCGCG 963
Query 906 GGACGTCGCCCGGGAGATGCTGAAGTTGTTTACGCCTCAACGGAAAGAGCAGAACGTGAA 965
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 964 GGACGTCGACCGGGAGATGCTGAAGTTGTATACGCCTCGACGGAAAGAGCAGAAAGTGAA 1023
Query 966 TTGAATTGGAAGGCCAAATATGGAATTGAGGAGATGTGTAGAGATTTGTGGAACTGGGCC 1025
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1024 TTGAATTGGAAGGCCAAATATGGGATTGAGGAGATGTGTAGAGATTTGTGGAACTGGGCT 1083
Query 1026 AGTAATAATCCTTATGGATATGATTCCTCTTCTGAAGACTCCTCTCATTAACTTT-CTTA 1084
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1084 AGTAATAATCCTTATGGATATGATTCCTCTTCTGAAGACAACTCTCATTAACTTTTCTTA 1143
Query 1085 ATTGTTTTCTTC 1096
|| |||||||||
Sbjct 1144 ATCGTTTTCTTC 1155
> AT4G10955.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:6713557-6718555 REVERSE LENGTH=2749
Length=2749
Score = 1260 bits (682), Expect = 0.0
Identities = 759/796 (95%), Gaps = 5/796 (1%)
Strand=Plus/Plus
Query 7 TCTGTTTCGTAACTATGATGGCTAAG-AACGTTCTAGTAACCGGTGGTGCTGGATACATC 65
|||||||||| | ||||||||| || ||||||||||||| |||||||||||||||||||
Sbjct 73 TCTGTTTCGT-A--ATGATGGCT-AGAAACGTTCTAGTAAGCGGTGGTGCTGGATACATC 128
Query 66 GGTAGTCACACGGTGCTTCAACTTCTTCTCGGTGGTTACTCCGTCGTAGTTGTTGATAAT 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 GGTAGTCACACGGTGCTTCAACTTCTTCTCGGTGGTTACTCCGTCGTAGTTGTTGATAAT 188
Query 126 CTCGATAATTCCTCAGCCGTCTCTCTTGAACGTGTGAAGAAACTCGCCGCCGAACACGGC 185
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 189 CTCGATAATTCCTCCGCCGTCTCTCTTCAACGTGTGAAGAAACTCGCGGCTGAACACGGA 248
Query 186 CAACGCCTCTCCTTCCACCAGGTGGATCTTCGAGACAAGCCTGCTCTTGAGAAGATATTC 245
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 249 GAACGCCTCTCCTTCCACCAGGTGGATCTTCGAGACAGGTCTGCTCTTGAGAAGATATTC 308
Query 246 TCAGAAACTAAGTTTGATGCAGTGATACATTTTGCTGGACTTAAAGCAGTTGGTGAGAGT 305
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TCAGAAACAAAGTTTGATGCAGTGATACATTTTGCTGGACTTAAAGCAGTTGGTGAGAGT 368
Query 306 GTAGAGAAGCCTTTGCTCTATTATAATAATAATCTTGTTGGGACTATTACTCTTTTGGAA 365
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 369 GTAGAGAAGCCTTTGCTTTATTATAATAATAATCTTGTTGGTACTATTACTCTTTTGGAA 428
Query 366 GTTATGGCTCAACATGGCTGCAAAAATCTTGTGTTTTCATCATCAGCCACTGTGTATGGC 425
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 429 GTTATGGCTCAACATGGCTGCAAAAATCTTGTGTTTTCATCATCAGCAACTGTGTATGGC 488
Query 426 TCTCCAAAGGAAGTTCCTTGTACAGAGGAGTTTCCGATTTCAGCATTGAACCCATATGGA 485
|||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 489 TCTCCAAAAGAAGTTCCTTGTACAGAGGAGTTTCCAATTTCTGCTTTGAACCCATATGGA 548
Query 486 CGAACAAAGCTATTCATTGAGGAAATCTGCCGTGATGTATACGGTTCTGACCCGGAATGG 545
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 549 CGAACAAAGCTATTCATTGAGGAAATCTGCCGCGATGTATACGGTTCTGACCCGGAATGG 608
Query 546 AAGATCATATTGCTTAGGTATTTTAATCCTGTTGGTGCACATCCTAGTGGTGAAATTGGT 605
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 609 AAGATTATATTGCTTAGGTATTTCAATCCTGTTGGTGCACATCCTAGTGGTGACATTGGT 668
Query 606 GAAGATCCTCGCGGTGTTCCCAACAATCTTATGCCTTTTGTACAACAAGTCGCTGTTGGT 665
||||| ||||| ||| |||| |||||||| ||||| |||||||||||||| |||||||||
Sbjct 669 GAAGACCCTCGTGGTATTCCAAACAATCTCATGCCCTTTGTACAACAAGTGGCTGTTGGT 728
Query 666 AGGAGACCTCATCTAACTGTCTTTGGAAATGATTACAATACAAAAGATGGAACAGGGGTT 725
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AGGAGACCTCATCTCACTGTCTTTGGAAATGATTACAATACAAAAGATGGAACAGGGGTT 788
Query 726 CGAGATTACATTCATGTTATTGATTTAGCTGATGGACACATAGCGGCTTTGCGTAAGCTA 785
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 789 CGAGATTACATTCATGTTATTGATTTAGCTGATGGACACATAGCGGCTCTACGTAAGCTA 848
Query 786 GAAGATTGCAAAATCG 801
||||||||||| ||||
Sbjct 849 GAAGATTGCAAGATCG 864
Score = 333 bits (180), Expect = 2e-90
Identities = 203/214 (95%), Gaps = 1/214 (0%)
Strand=Plus/Plus
Query 884 GAAAATCCCTCTGGTGATCGCTGGACGTCGCCCGGGAGATGCTGAAGTTGTTTACGCCTC 943
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 864 GAAAATCCCTCTGGTGATCGCGGGACGTCGACCGGGAGATGCTGAAGTTGTATACGCCTC 923
Query 944 AACGGAAAGAGCAGAACGTGAATTGAATTGGAAGGCCAAATATGGAATTGAGGAGATGTG 1003
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 924 GACGGAAAGAGCAGAAAGTGAATTGAATTGGAAGGCCAAATATGGGATTGAGGAGATGTG 983
Query 1004 TAGAGATTTGTGGAACTGGGCCAGTAATAATCCTTATGGATATGATTCCTCTTCTGAAGA 1063
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 984 TAGAGATTTGTGGAACTGGGCTAGTAATAATCCTTATGGATATGATTCCTCTTCTGAAGA 1043
Query 1064 CTCCTCTCATTAACTTT-CTTAATTGTTTTCTTC 1096
| |||||||||||||| |||||| |||||||||
Sbjct 1044 CAACTCTCATTAACTTTTCTTAATCGTTTTCTTC 1077
> AT4G23920.1 | Symbols: UGE2, ATUGE2 | UDP-D-glucose/UDP-D-galactose
4-epimerase 2 | chr4:12431277-12433864 FORWARD LENGTH=1390
Length=1390
Score = 1061 bits (574), Expect = 0.0
Identities = 902/1061 (85%), Gaps = 19/1061 (2%)
Strand=Plus/Plus
Query 23 GATGGCTAAGAACGTTCTAGTAACCGGTGGTGCTGGATACATCGGTAGTCACACGGTGCT 82
|||||| |||| ||| | || ||||| || ||||| || ||||| ||||| || || ||
Sbjct 139 GATGGCGAAGAGTGTTTTGGTTACCGGCGGCGCTGGCTATATCGGAAGTCATACTGTTCT 198
Query 83 TCAACTTCTTCTCGGTGGTTACTCCGTCGTAGTTGTTGATAATCT-CGATAATTCCTCAG 141
|||||| ||| ||||||||||||| ||| |||||||| ||| | ||| |||||||| |
Sbjct 199 TCAACTGCTTGAAGGTGGTTACTCCGCCGTCGTTGTTGACAAT-TACGACAATTCCTCTG 257
Query 142 CCGTC-TCTCTTGAACGTGTGAAGAAACTCGCCGCCGAACACGGCCAA-CGCCTCTCCTT 199
| | | || ||| | || |||||||||||||||| |||| |||| || |||||||||||
Sbjct 258 CTG-CTTCGCTTCAGCGCGTGAAGAAACTCGCCGGCGAAAACGG-AAACCGCCTCTCCTT 315
Query 200 CCACCAGGTGGATCTTCGAGACAAGCCTGCTCTTGAGAAGATATTCTCAGAAACTAAGTT 259
||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 316 CCACCAGGTGGATCTCCGAGACAGGCCTGCGCTTGAGAAGATATTCTCAGAAACAAAGTT 375
Query 260 TGATGCAGTGATACATTTTGCTGGACTTAAAGCAGTTGGTGAGAGTGTAGAGAAGCCTTT 319
||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 376 TGATGCAGTGATACACTTTGCTGGACTTAAAGCAGTAGGTGAGAGTGTGGAGAAGCCTTT 435
Query 320 GCTCTATTATAATAATAATC-TTGTTGGGACTATTACTCTTTTGGAAGTTATGGCTCAAC 378
|||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||||
Sbjct 436 GCTCTATTATAATAATAA-CATTGTTGGCACTGTTACTCTTTTGGAGGTTATGGCTCAAT 494
Query 379 ATGGCTGCAAAAATCTTGTGTTTTCATCATCAGCCACTGTGTATGGCTCTCCAAAGGAAG 438
| ||||||||||||||||| |||||||||||||| ||||| ||||||| || ||||| |
Sbjct 495 ACGGCTGCAAAAATCTTGTATTTTCATCATCAGCTACTGTCTATGGCTGGCCTAAGGAGG 554
Query 439 TTCCTTGTACAGAGGAGTTTCCGATTTCAGC-ATTGAACCCATATGGACGAACAAAGCTA 497
||||||| || ||||||| || ||||| || | | ||||||||||| || ||||||||
Sbjct 555 TTCCTTGCACTGAGGAGTCACCAATTTCTGCCACT-AACCCATATGGCCGTACAAAGCTT 613
Query 498 TTCATTGAGGAAATCTGCCGTGATGTATA-CGGTTCTGACCCGGAATGGAAGATCATATT 556
|| || || || || ||||| |||||| | || ||||||| |||||||||||||||||||
Sbjct 614 TTTATCGAAGAGATTTGCCGGGATGTACATCG-TTCTGACTCGGAATGGAAGATCATATT 672
Query 557 GCTTAGGTATTTTAATCCTGTTGGTGCACATCCTAGTGGTGAAATTGGTGAAGATCCTCG 616
|||||| || || || |||||||||||||||||||||||| | ||||||||||||||||
Sbjct 673 GCTTAGATACTTCAACCCTGTTGGTGCACATCCTAGTGGTTACATTGGTGAAGATCCTCT 732
Query 617 CGGTGTTCCCAACAATCTTATGCCTTTTGTACAACAAGTCGCTGTTGGTAGGAGACCTCA 676
|| |||||||||||||| ||||||| ||| |||||||| || ||||| ||||||||||
Sbjct 733 TGGAGTTCCCAACAATCTCATGCCTTATGTCCAACAAGTTGCAGTTGGCCGGAGACCTCA 792
Query 677 TCTAACTGTCTTTGGAAATGATTACAATACAAAAGATGGAACAGGGGTTCGAGATTACAT 736
|| ||||||||||||| || ||||| ||||| ||||| ||||||||| ||||||||||
Sbjct 793 CCTTACTGTCTTTGGAACCGACTACAAGACAAAGGATGGTACAGGGGTTAGAGATTACAT 852
Query 737 TCATGTTATTGATTTAGCTGATGGACACATAGCGGCTTTGCGTAAGCTAGAAGAT-TGCA 795
|||||| || |||||||| |||||||||||||| ||| ||||||||||||| ||| | ||
Sbjct 853 TCATGTCATGGATTTAGCAGATGGACACATAGCTGCTCTGCGTAAGCTAGATGATCT-CA 911
Query 796 AAATCGGTTGTGAAGTGTACAATCTCGGAACAGGAAATGGAACATCGGTTCTTGAAATGG 855
||||| ||||||| || |||||||| ||||| || |||||||||||||| || |||||||
Sbjct 912 AAATCAGTTGTGAGGTATACAATCTTGGAACGGGTAATGGAACATCGGTCCTAGAAATGG 971
Query 856 TTGATGCCTTTGAAAAAGCGTCCGGGAAGAAAATCCCTCTGGTGATCGCTGGACGTCGCC 915
| | ||||||||||||||| ||||| |||||||||||| ||||||| |||||||| || |
Sbjct 972 TCGCTGCCTTTGAAAAAGCATCCGGAAAGAAAATCCCTTTGGTGATGGCTGGACGACGTC 1031
Query 916 CGGGAGATGCTGAAGTTGTTTACGCCTCAACGGAAAGAGCAGAACGTGAATTGAATTGGA 975
| ||||| |||||||||||||||||||||||||||| |||||| || ||| | |||||||
Sbjct 1032 CTGGAGACGCTGAAGTTGTTTACGCCTCAACGGAAAAAGCAGAGCGCGAACTAAATTGGA 1091
Query 976 AGGCCAA-ATATGGAATTGAGGAGATGTGTAGAGATTTGTGGAACTGGGCCAGTAATAAT 1034
|||| || | |||| || |||||||||||||| ||| | ||||| ||||| || |||||
Sbjct 1092 AGGCTAAGA-ATGGGATAGAGGAGATGTGTAGGGATCTATGGAATTGGGCAAGCAATAAC 1150
Query 1035 CCTTATGGATATGATTCCTCTTCTGAA-GACTCCTCT-CAT 1073
|| || || || ||||||| || || | ||||||| |||
Sbjct 1151 CCCTACGGCTACAATTCCTCCTCC-AATGGCTCCTCTTCAT 1190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53714583150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5