BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942929

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG00150.1 | Symbols: ORF116 | hypothetical protein | chrM:357...   575    1e-163


> ATMG00150.1 | Symbols: ORF116 | hypothetical protein | chrM:35782-36132 
FORWARD LENGTH=351
Length=351

 Score =  575 bits (311),  Expect = 1e-163
 Identities = 326/332 (98%), Gaps = 6/332 (2%)
 Strand=Plus/Plus

Query  46   AACTAGAAGTCAACTCAAAACCGCTAAAAGGACCTATTATTTGCCCTATTAGGACCTATT  105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  26   AACTAGAAGTCAACTCAAAACCGCTAAAAGGACCTATTATTTGCCCTATTAGGACCTATT  85

Query  106  ATTCTAAAGTACCATTGGAGCTCCTTTTCCCGACAACAGATCGGAGATTTTACTTTCTCA  165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  86   ATTCTAAAGTACCATTGGAGCTCCTTTTCCCGACAACAGATCGGAGATTTTACTTTCTCA  145

Query  166  AGTCATACGTCTTTTGTTCAGCCAACAGTGTTCCGCTCTACTTATTATTACTTACTAGCG  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  146  AGTCATACGTCTTTTGTTCAGCCAACAGTGTTCCGCTCTACTTATTATTACTTACTAGCG  205

Query  226  CCCTTCACTTCAACTCATACATACTACTTTTTGACTTTCAGCTTATTCCCAAATCAAAGC  285
            |||||||||||||||||||||||||||||||||||||||||||    |  ||||||||||
Sbjct  206  CCCTTCACTTCAACTCATACATACTACTTTTTGACTTTCAGCT----C--AAATCAAAGC  259

Query  286  TACTTGCTTATAAGAGAAGAGCAAGGTGCGTAGCTGGCTTGTTAAAAAGCATGGAAAGGT  345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  260  TACTTGCTTATAAGAGAAGAGCAAGGTGCGTAGCTGGCTTGTTAAAAAGCATGGAAAGGT  319

Query  346  ATCCAGAAAGCACAGTAACAGCTATGATATAG  377
            ||||||||||||||||||||||||||||||||
Sbjct  320  ATCCAGAAAGCACAGTAACAGCTATGATATAG  351



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18749870377


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5