BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942933
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2... 989 0.0
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2... 839 0.0
> AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2765962-2767957
REVERSE LENGTH=930
Length=930
Score = 989 bits (535), Expect = 0.0
Identities = 731/822 (89%), Gaps = 28/822 (3%)
Strand=Plus/Plus
Query 93 AACTGGTTGGATCTTCCGCCGGAGTTGACGACTTCGATCCTGCTCCGACTTAGCGTGACT 152
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 AACTGGGTGGATCTTCCGCCGGAGTTGACGACTTCGATCCTGCTCCGACTTAGCGTGACT 174
Query 153 GATATACTGGATAACGCTCGGAAGGTGTGCAGA-CAGTGGCGACGCGTATGTAAAGACCC 211
||||||||||||||||||||||| |||||||| | ||||||||| | |||||||||||
Sbjct 175 GATATACTGGATAACGCTCGGAAACTGTGCAGAGC-GTGGCGACGTATCTGTAAAGACCC 233
Query 212 TTCGATGTGGCAGAAAATCAACTTGCGAGACTGCCT-ATTCTATCG-GTTCGATTTCGAG 269
||| ||||||| |||||||||||||||||||||||| || || || |||||||||||||
Sbjct 234 TTCCATGTGGCGGAAAATCAACTTGCGAGACTGCCTCATG-TA-CGAGTTCGATTTCGAG 291
Query 270 GGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGATTGCTAGAGATTAACATTGAA 329
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 292 AGCATGTGCCGTCACATTGTTGATCTCAGCCAAGGTGGCTTGCTAGAGATTAACATTGAA 351
Query 330 CATTTCGTGAGCGATTCTCTCCTGAGCTACATCGCCGATAGATCAAGTAATCTGAAAAGT 389
|| |||||||||||||||||||| || ||||||| |||||||||| ||||||||||||||
Sbjct 352 CACTTCGTGAGCGATTCTCTCCTCAGTTACATCGTCGATAGATCATGTAATCTGAAAAGT 411
Query 390 CTTGGACTTTCAATCTATGAACCAATGACGAACAAAGGAGTTATGAACGGGATCGCA-AA 448
|||||| |||||||||||||||||||||||||||||||||| |||||||| |||| | ||
Sbjct 412 CTTGGAATTTCAATCTATGAACCAATGACGAACAAAGGAGTAATGAACGGAATCG-AGAA 470
Query 449 ATTTCCATTGCTTGAAACCCTCGAGGTCTTTCACTCATCGCTTAAACTGGATTTGAAAGC 508
| ||||| |||||||||| |||| | |||| ||||| ||| ||||||||||||| |||||
Sbjct 471 ACTTCCACTGCTTGAAACTCTCGTGATCTTCCACTCCTCGATTAAACTGGATTTAAAAGC 530
Query 509 TATAGGCCACGTTTGCCCACAGCTAAAGACATTGAAGCTAAACTCCTTATGCTGCCCAGG 568
|||||||| | |||||||| ||||||||||||||||||||||||||| ||| | ||
Sbjct 531 AATAGGCCATGCATGCCCACAACTAAAGACATTGAAGCTAAACTCCTTAGGCT-C--AGA 587
Query 569 GCCGGCCCATGGCAATTATGCCATAAGCCAGTTAGGCGACATGCCCCCTCTCGTCGAATG 628
|| |||||||| | | ||||||||| ||||| |||| |||| | || |||||||
Sbjct 588 GCTGGCCCATG--A------C-ATAAGCCAGGTAGGCTACATTCCCC-T-TC-TCGAATG 635
Query 629 TGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGCTTAT 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 TGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGCTTAT 695
Query 689 GGGGAACGGACTAACCAATACAGGCTTGAATGTCATTCTCGACCGCTGTCCTCACCTGGA 748
||| |||||||||||||| || |||||||||| |||||| ||| | ||||||||||||||
Sbjct 696 GGGTAACGGACTAACCAACACTGGCTTGAATGCCATTCTTGACGGTTGTCCTCACCTGGA 755
Query 749 A---CACCTTGATGTACGCAAGTGTTTCAACATGAACCTTGTCGGGAATCTTGAGAAGCG 805
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 756 AGAACACCTTGATGTACGCAAGTGTTTCAACATTAACCTTGTCGGGAATCTTGAAAAGCG 815
Query 806 ATGTTTGGAGAGGATCAAAGAGTTGAGACG-CCCCGGTGACTCAACCGCCGATTACCCAT 864
|||| || |||||||||||||||||||||| |||| ||||||||| || |||||||| |
Sbjct 816 ATGTATGAAGAGGATCAAAGAGTTGAGACGGCCCCA-TGACTCAACTGCGGATTACCCGT 874
Query 865 ATAATATCGGTGTGTCAGTTATGCTTCAGATCATGATTTCAT 906
||| |||| |||||||| | || ||||||| |||||| |||
Sbjct 875 ATAGTATCAGTGTGTCAATGGTGGTTCAGATGATGATTACAT 916
> AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2763256-2765351
REVERSE LENGTH=915
Length=915
Score = 839 bits (454), Expect = 0.0
Identities = 693/804 (86%), Gaps = 33/804 (4%)
Strand=Plus/Plus
Query 81 AAAGAGC-AACGAAACTGGTTGGATCTTCCGCCGGAGTTGACGACTTCGATCCTGCTCCG 139
||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 121 AAAGAGCGAA-GAAACTGGGTGGATCTTCCGCCGGAGCTGACGACTTCGATCCTGCTGCG 179
Query 140 ACTTAGCGTGACTGATATACTGGATAACGCTCGGAAGGTGTGCAGACAGTGGCGACGCGT 199
|||||| |||||||||||||||| ||||||| ||||||||| | | ||||||||||| |
Sbjct 180 TCTTAGCCTGACTGATATACTGGACAACGCTCAGAAGGTGTGTAAAGAGTGGCGACGCAT 239
Query 200 ATGTAAAGACCCTTCGATGTGGCAGAAAATCAACTTGCGAGACTGCCT-ATTCTATC-GG 257
|||||||||||||||||||||| |||||||||| |||||||||||| | | || |
Sbjct 240 TTGTAAAGACCCTTCGATGTGGCGGAAAATCAACACGCGAGACTGCCTCA-TGTA-CAAC 297
Query 258 TTCGATTTCGAGGGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGATTGCTAGAG 317
|| ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 TTTGATTTCGTGAGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGCTTGCTAGAG 357
Query 318 ATTAAC-AT--TGAACATTTCGTGAGCGATTCTCTCCTGAGCTACATCGCCGATAGATCA 374
|| ||| | |||||| ||| |||||||||||||||| |||||||| |||||||
Sbjct 358 ATCAACGTTGATGAACACTTCTTGAGCGATTCTCTCCTCAGCTACATTACCGATAG---- 413
Query 375 AGTAATCTGAAAAGTCTTGGACTTTCAATCT-ATGAACCAA---TGACG-AACAAAGGAG 429
| ||||||| ||||||||||||| ||| | | |||| ||||| ||| |||||
Sbjct 414 -G-AATCTGAGAAGTCTTGGACTTGGAATGTGCT-TTCCAAGGGTGACGAAAC-TAGGAG 469
Query 430 TTATGAACGGGATCGCAAAATTTCCATTGCTTGAAACCCTCGAGGTCTTTCACTCATCGC 489
|| |||||| || |||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 470 TTGTGAACGCAATTGCAAAAATTCCATTGCTTGAAACCCTCGAGGTCACTCACTCAT-G- 527
Query 490 T-T-AAACTGGATTTGAAAGCTATAGGCCACGTTTGCCCACAGCTAAAGACATTGAAGCT 547
| | ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 528 TATAAAACTGGATTTAAAAGCTATAGGCCACGCTTGCCCACAGCTAAAGACATTGAAGCT 587
Query 548 AAACTCCTTATGCTGCCCAGGGCCGGCCCA-TGGCAATTATGCCAT-AAGCCAGTTAGGC 605
|||||||||| || ||| | |||| ||| | || ||| |||| || || | ||||| |
Sbjct 588 AAACTCCTTAGGCCGCCTATGGCCAGCC-AGTGACAAGTATGACAGCAA-CGTGTTAGAC 645
Query 606 GACATGCCCCCTCTCGTCGAATGTGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCC 665
|| ||| ||||||| ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 646 GATATGGGGCCTCTCG---AATGTGATGATGATGCTTTAGCAATTGCTGAAAGCATGCCC 702
Query 666 AAACTACGCCACCTCCAGCTTATGGGGAACGGACTAACCAATACAGGCTTGAATGTCATT 725
||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||| ||||
Sbjct 703 AAACTACACCACCTCCAGCTTATGGCTAACAGACTAACCAACACAGGCTTGAATGCCATT 762
Query 726 CTCGACCGCTGTCCTCACCTGGAACACCTTGATGTACGCAAGTGTTTCAACATGAACCTT 785
|||||| | |||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 763 CTCGACGGTTGTCCTCACCTGGAACACCTTGATGTACGCAAGTGTTTCAGGATTAGCCTT 822
Query 786 GTCGGGAATCTTGAGAAGCGATGTTTGGAGAGGATCAAAGAGTTGAGACGCCCCGGTGAC 845
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 823 GTCGGGAATCTTGAGAAGCGATGTTTGGAGATGATCAAAGAGTTGAGACGCCCCGGTGAC 882
Query 846 TCAACCGCCGATTACCCATATAAT 869
|||||||| |||||||||||||||
Sbjct 883 TCAACCGCAGATTACCCATATAAT 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5