BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942933 Length=963 Score E Sequences producing significant alignments: (Bits) Value AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2... 989 0.0 AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2... 839 0.0 > AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2765962-2767957 REVERSE LENGTH=930 Length=930 Score = 989 bits (535), Expect = 0.0 Identities = 731/822 (89%), Gaps = 28/822 (3%) Strand=Plus/Plus Query 93 AACTGGTTGGATCTTCCGCCGGAGTTGACGACTTCGATCCTGCTCCGACTTAGCGTGACT 152 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115 AACTGGGTGGATCTTCCGCCGGAGTTGACGACTTCGATCCTGCTCCGACTTAGCGTGACT 174 Query 153 GATATACTGGATAACGCTCGGAAGGTGTGCAGA-CAGTGGCGACGCGTATGTAAAGACCC 211 ||||||||||||||||||||||| |||||||| | ||||||||| | ||||||||||| Sbjct 175 GATATACTGGATAACGCTCGGAAACTGTGCAGAGC-GTGGCGACGTATCTGTAAAGACCC 233 Query 212 TTCGATGTGGCAGAAAATCAACTTGCGAGACTGCCT-ATTCTATCG-GTTCGATTTCGAG 269 ||| ||||||| |||||||||||||||||||||||| || || || ||||||||||||| Sbjct 234 TTCCATGTGGCGGAAAATCAACTTGCGAGACTGCCTCATG-TA-CGAGTTCGATTTCGAG 291 Query 270 GGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGATTGCTAGAGATTAACATTGAA 329 ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 292 AGCATGTGCCGTCACATTGTTGATCTCAGCCAAGGTGGCTTGCTAGAGATTAACATTGAA 351 Query 330 CATTTCGTGAGCGATTCTCTCCTGAGCTACATCGCCGATAGATCAAGTAATCTGAAAAGT 389 || |||||||||||||||||||| || ||||||| |||||||||| |||||||||||||| Sbjct 352 CACTTCGTGAGCGATTCTCTCCTCAGTTACATCGTCGATAGATCATGTAATCTGAAAAGT 411 Query 390 CTTGGACTTTCAATCTATGAACCAATGACGAACAAAGGAGTTATGAACGGGATCGCA-AA 448 |||||| |||||||||||||||||||||||||||||||||| |||||||| |||| | || Sbjct 412 CTTGGAATTTCAATCTATGAACCAATGACGAACAAAGGAGTAATGAACGGAATCG-AGAA 470 Query 449 ATTTCCATTGCTTGAAACCCTCGAGGTCTTTCACTCATCGCTTAAACTGGATTTGAAAGC 508 | ||||| |||||||||| |||| | |||| ||||| ||| ||||||||||||| ||||| Sbjct 471 ACTTCCACTGCTTGAAACTCTCGTGATCTTCCACTCCTCGATTAAACTGGATTTAAAAGC 530 Query 509 TATAGGCCACGTTTGCCCACAGCTAAAGACATTGAAGCTAAACTCCTTATGCTGCCCAGG 568 |||||||| | |||||||| ||||||||||||||||||||||||||| ||| | || Sbjct 531 AATAGGCCATGCATGCCCACAACTAAAGACATTGAAGCTAAACTCCTTAGGCT-C--AGA 587 Query 569 GCCGGCCCATGGCAATTATGCCATAAGCCAGTTAGGCGACATGCCCCCTCTCGTCGAATG 628 || |||||||| | | ||||||||| ||||| |||| |||| | || ||||||| Sbjct 588 GCTGGCCCATG--A------C-ATAAGCCAGGTAGGCTACATTCCCC-T-TC-TCGAATG 635 Query 629 TGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGCTTAT 688 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 636 TGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGCTTAT 695 Query 689 GGGGAACGGACTAACCAATACAGGCTTGAATGTCATTCTCGACCGCTGTCCTCACCTGGA 748 ||| |||||||||||||| || |||||||||| |||||| ||| | |||||||||||||| Sbjct 696 GGGTAACGGACTAACCAACACTGGCTTGAATGCCATTCTTGACGGTTGTCCTCACCTGGA 755 Query 749 A---CACCTTGATGTACGCAAGTGTTTCAACATGAACCTTGTCGGGAATCTTGAGAAGCG 805 | ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 756 AGAACACCTTGATGTACGCAAGTGTTTCAACATTAACCTTGTCGGGAATCTTGAAAAGCG 815 Query 806 ATGTTTGGAGAGGATCAAAGAGTTGAGACG-CCCCGGTGACTCAACCGCCGATTACCCAT 864 |||| || |||||||||||||||||||||| |||| ||||||||| || |||||||| | Sbjct 816 ATGTATGAAGAGGATCAAAGAGTTGAGACGGCCCCA-TGACTCAACTGCGGATTACCCGT 874 Query 865 ATAATATCGGTGTGTCAGTTATGCTTCAGATCATGATTTCAT 906 ||| |||| |||||||| | || ||||||| |||||| ||| Sbjct 875 ATAGTATCAGTGTGTCAATGGTGGTTCAGATGATGATTACAT 916 > AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2763256-2765351 REVERSE LENGTH=915 Length=915 Score = 839 bits (454), Expect = 0.0 Identities = 693/804 (86%), Gaps = 33/804 (4%) Strand=Plus/Plus Query 81 AAAGAGC-AACGAAACTGGTTGGATCTTCCGCCGGAGTTGACGACTTCGATCCTGCTCCG 139 ||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| || Sbjct 121 AAAGAGCGAA-GAAACTGGGTGGATCTTCCGCCGGAGCTGACGACTTCGATCCTGCTGCG 179 Query 140 ACTTAGCGTGACTGATATACTGGATAACGCTCGGAAGGTGTGCAGACAGTGGCGACGCGT 199 |||||| |||||||||||||||| ||||||| ||||||||| | | ||||||||||| | Sbjct 180 TCTTAGCCTGACTGATATACTGGACAACGCTCAGAAGGTGTGTAAAGAGTGGCGACGCAT 239 Query 200 ATGTAAAGACCCTTCGATGTGGCAGAAAATCAACTTGCGAGACTGCCT-ATTCTATC-GG 257 |||||||||||||||||||||| |||||||||| |||||||||||| | | || | Sbjct 240 TTGTAAAGACCCTTCGATGTGGCGGAAAATCAACACGCGAGACTGCCTCA-TGTA-CAAC 297 Query 258 TTCGATTTCGAGGGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGATTGCTAGAG 317 || ||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 298 TTTGATTTCGTGAGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGCTTGCTAGAG 357 Query 318 ATTAAC-AT--TGAACATTTCGTGAGCGATTCTCTCCTGAGCTACATCGCCGATAGATCA 374 || ||| | |||||| ||| |||||||||||||||| |||||||| ||||||| Sbjct 358 ATCAACGTTGATGAACACTTCTTGAGCGATTCTCTCCTCAGCTACATTACCGATAG---- 413 Query 375 AGTAATCTGAAAAGTCTTGGACTTTCAATCT-ATGAACCAA---TGACG-AACAAAGGAG 429 | ||||||| ||||||||||||| ||| | | |||| ||||| ||| ||||| Sbjct 414 -G-AATCTGAGAAGTCTTGGACTTGGAATGTGCT-TTCCAAGGGTGACGAAAC-TAGGAG 469 Query 430 TTATGAACGGGATCGCAAAATTTCCATTGCTTGAAACCCTCGAGGTCTTTCACTCATCGC 489 || |||||| || |||||| |||||||||||||||||||||||||| |||||||| | Sbjct 470 TTGTGAACGCAATTGCAAAAATTCCATTGCTTGAAACCCTCGAGGTCACTCACTCAT-G- 527 Query 490 T-T-AAACTGGATTTGAAAGCTATAGGCCACGTTTGCCCACAGCTAAAGACATTGAAGCT 547 | | ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 528 TATAAAACTGGATTTAAAAGCTATAGGCCACGCTTGCCCACAGCTAAAGACATTGAAGCT 587 Query 548 AAACTCCTTATGCTGCCCAGGGCCGGCCCA-TGGCAATTATGCCAT-AAGCCAGTTAGGC 605 |||||||||| || ||| | |||| ||| | || ||| |||| || || | ||||| | Sbjct 588 AAACTCCTTAGGCCGCCTATGGCCAGCC-AGTGACAAGTATGACAGCAA-CGTGTTAGAC 645 Query 606 GACATGCCCCCTCTCGTCGAATGTGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCC 665 || ||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||| Sbjct 646 GATATGGGGCCTCTCG---AATGTGATGATGATGCTTTAGCAATTGCTGAAAGCATGCCC 702 Query 666 AAACTACGCCACCTCCAGCTTATGGGGAACGGACTAACCAATACAGGCTTGAATGTCATT 725 ||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||| |||| Sbjct 703 AAACTACACCACCTCCAGCTTATGGCTAACAGACTAACCAACACAGGCTTGAATGCCATT 762 Query 726 CTCGACCGCTGTCCTCACCTGGAACACCTTGATGTACGCAAGTGTTTCAACATGAACCTT 785 |||||| | |||||||||||||||||||||||||||||||||||||||| || | |||| Sbjct 763 CTCGACGGTTGTCCTCACCTGGAACACCTTGATGTACGCAAGTGTTTCAGGATTAGCCTT 822 Query 786 GTCGGGAATCTTGAGAAGCGATGTTTGGAGAGGATCAAAGAGTTGAGACGCCCCGGTGAC 845 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 823 GTCGGGAATCTTGAGAAGCGATGTTTGGAGATGATCAAAGAGTTGAGACGCCCCGGTGAC 882 Query 846 TCAACCGCCGATTACCCATATAAT 869 |||||||| ||||||||||||||| Sbjct 883 TCAACCGCAGATTACCCATATAAT 906 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47119629886 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5