BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942933

Length=963
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G05475.1 | Symbols:  | RNI-like superfamily protein | chr4:2...   989    0.0  
  AT4G05470.1 | Symbols:  | RNI-like superfamily protein | chr4:2...   839    0.0  


> AT4G05475.1 | Symbols:  | RNI-like superfamily protein | chr4:2765962-2767957 
REVERSE LENGTH=930
Length=930

 Score =  989 bits (535),  Expect = 0.0
 Identities = 731/822 (89%), Gaps = 28/822 (3%)
 Strand=Plus/Plus

Query  93   AACTGGTTGGATCTTCCGCCGGAGTTGACGACTTCGATCCTGCTCCGACTTAGCGTGACT  152
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  115  AACTGGGTGGATCTTCCGCCGGAGTTGACGACTTCGATCCTGCTCCGACTTAGCGTGACT  174

Query  153  GATATACTGGATAACGCTCGGAAGGTGTGCAGA-CAGTGGCGACGCGTATGTAAAGACCC  211
            |||||||||||||||||||||||  |||||||| | |||||||||  | |||||||||||
Sbjct  175  GATATACTGGATAACGCTCGGAAACTGTGCAGAGC-GTGGCGACGTATCTGTAAAGACCC  233

Query  212  TTCGATGTGGCAGAAAATCAACTTGCGAGACTGCCT-ATTCTATCG-GTTCGATTTCGAG  269
            ||| ||||||| |||||||||||||||||||||||| ||  || || |||||||||||||
Sbjct  234  TTCCATGTGGCGGAAAATCAACTTGCGAGACTGCCTCATG-TA-CGAGTTCGATTTCGAG  291

Query  270  GGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGATTGCTAGAGATTAACATTGAA  329
             ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  292  AGCATGTGCCGTCACATTGTTGATCTCAGCCAAGGTGGCTTGCTAGAGATTAACATTGAA  351

Query  330  CATTTCGTGAGCGATTCTCTCCTGAGCTACATCGCCGATAGATCAAGTAATCTGAAAAGT  389
            || |||||||||||||||||||| || ||||||| |||||||||| ||||||||||||||
Sbjct  352  CACTTCGTGAGCGATTCTCTCCTCAGTTACATCGTCGATAGATCATGTAATCTGAAAAGT  411

Query  390  CTTGGACTTTCAATCTATGAACCAATGACGAACAAAGGAGTTATGAACGGGATCGCA-AA  448
            |||||| |||||||||||||||||||||||||||||||||| |||||||| |||| | ||
Sbjct  412  CTTGGAATTTCAATCTATGAACCAATGACGAACAAAGGAGTAATGAACGGAATCG-AGAA  470

Query  449  ATTTCCATTGCTTGAAACCCTCGAGGTCTTTCACTCATCGCTTAAACTGGATTTGAAAGC  508
            | ||||| |||||||||| |||| | |||| ||||| ||| ||||||||||||| |||||
Sbjct  471  ACTTCCACTGCTTGAAACTCTCGTGATCTTCCACTCCTCGATTAAACTGGATTTAAAAGC  530

Query  509  TATAGGCCACGTTTGCCCACAGCTAAAGACATTGAAGCTAAACTCCTTATGCTGCCCAGG  568
             |||||||| |  |||||||| ||||||||||||||||||||||||||| ||| |  || 
Sbjct  531  AATAGGCCATGCATGCCCACAACTAAAGACATTGAAGCTAAACTCCTTAGGCT-C--AGA  587

Query  569  GCCGGCCCATGGCAATTATGCCATAAGCCAGTTAGGCGACATGCCCCCTCTCGTCGAATG  628
            || ||||||||  |      | ||||||||| ||||| |||| |||| | || |||||||
Sbjct  588  GCTGGCCCATG--A------C-ATAAGCCAGGTAGGCTACATTCCCC-T-TC-TCGAATG  635

Query  629  TGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGCTTAT  688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  636  TGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGCTTAT  695

Query  689  GGGGAACGGACTAACCAATACAGGCTTGAATGTCATTCTCGACCGCTGTCCTCACCTGGA  748
            ||| |||||||||||||| || |||||||||| |||||| ||| | ||||||||||||||
Sbjct  696  GGGTAACGGACTAACCAACACTGGCTTGAATGCCATTCTTGACGGTTGTCCTCACCTGGA  755

Query  749  A---CACCTTGATGTACGCAAGTGTTTCAACATGAACCTTGTCGGGAATCTTGAGAAGCG  805
            |   ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  756  AGAACACCTTGATGTACGCAAGTGTTTCAACATTAACCTTGTCGGGAATCTTGAAAAGCG  815

Query  806  ATGTTTGGAGAGGATCAAAGAGTTGAGACG-CCCCGGTGACTCAACCGCCGATTACCCAT  864
            |||| || |||||||||||||||||||||| ||||  ||||||||| || |||||||| |
Sbjct  816  ATGTATGAAGAGGATCAAAGAGTTGAGACGGCCCCA-TGACTCAACTGCGGATTACCCGT  874

Query  865  ATAATATCGGTGTGTCAGTTATGCTTCAGATCATGATTTCAT  906
            ||| |||| |||||||| |  || ||||||| |||||| |||
Sbjct  875  ATAGTATCAGTGTGTCAATGGTGGTTCAGATGATGATTACAT  916


> AT4G05470.1 | Symbols:  | RNI-like superfamily protein | chr4:2763256-2765351 
REVERSE LENGTH=915
Length=915

 Score =  839 bits (454),  Expect = 0.0
 Identities = 693/804 (86%), Gaps = 33/804 (4%)
 Strand=Plus/Plus

Query  81   AAAGAGC-AACGAAACTGGTTGGATCTTCCGCCGGAGTTGACGACTTCGATCCTGCTCCG  139
            ||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct  121  AAAGAGCGAA-GAAACTGGGTGGATCTTCCGCCGGAGCTGACGACTTCGATCCTGCTGCG  179

Query  140  ACTTAGCGTGACTGATATACTGGATAACGCTCGGAAGGTGTGCAGACAGTGGCGACGCGT  199
             |||||| |||||||||||||||| ||||||| ||||||||| | | ||||||||||| |
Sbjct  180  TCTTAGCCTGACTGATATACTGGACAACGCTCAGAAGGTGTGTAAAGAGTGGCGACGCAT  239

Query  200  ATGTAAAGACCCTTCGATGTGGCAGAAAATCAACTTGCGAGACTGCCT-ATTCTATC-GG  257
             |||||||||||||||||||||| ||||||||||  |||||||||||| | | || |   
Sbjct  240  TTGTAAAGACCCTTCGATGTGGCGGAAAATCAACACGCGAGACTGCCTCA-TGTA-CAAC  297

Query  258  TTCGATTTCGAGGGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGATTGCTAGAG  317
            || ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  298  TTTGATTTCGTGAGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGCTTGCTAGAG  357

Query  318  ATTAAC-AT--TGAACATTTCGTGAGCGATTCTCTCCTGAGCTACATCGCCGATAGATCA  374
            || |||  |  |||||| ||| |||||||||||||||| ||||||||  |||||||    
Sbjct  358  ATCAACGTTGATGAACACTTCTTGAGCGATTCTCTCCTCAGCTACATTACCGATAG----  413

Query  375  AGTAATCTGAAAAGTCTTGGACTTTCAATCT-ATGAACCAA---TGACG-AACAAAGGAG  429
             | ||||||| |||||||||||||  ||| |  |   ||||   ||||| |||  |||||
Sbjct  414  -G-AATCTGAGAAGTCTTGGACTTGGAATGTGCT-TTCCAAGGGTGACGAAAC-TAGGAG  469

Query  430  TTATGAACGGGATCGCAAAATTTCCATTGCTTGAAACCCTCGAGGTCTTTCACTCATCGC  489
            || ||||||  || |||||| ||||||||||||||||||||||||||  |||||||| | 
Sbjct  470  TTGTGAACGCAATTGCAAAAATTCCATTGCTTGAAACCCTCGAGGTCACTCACTCAT-G-  527

Query  490  T-T-AAACTGGATTTGAAAGCTATAGGCCACGTTTGCCCACAGCTAAAGACATTGAAGCT  547
            | | ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct  528  TATAAAACTGGATTTAAAAGCTATAGGCCACGCTTGCCCACAGCTAAAGACATTGAAGCT  587

Query  548  AAACTCCTTATGCTGCCCAGGGCCGGCCCA-TGGCAATTATGCCAT-AAGCCAGTTAGGC  605
            |||||||||| || ||| | |||| ||| | || ||| |||| ||  || |  ||||| |
Sbjct  588  AAACTCCTTAGGCCGCCTATGGCCAGCC-AGTGACAAGTATGACAGCAA-CGTGTTAGAC  645

Query  606  GACATGCCCCCTCTCGTCGAATGTGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCC  665
            || |||   |||||||   ||||||||||||||||| ||||||| |||||||||||||||
Sbjct  646  GATATGGGGCCTCTCG---AATGTGATGATGATGCTTTAGCAATTGCTGAAAGCATGCCC  702

Query  666  AAACTACGCCACCTCCAGCTTATGGGGAACGGACTAACCAATACAGGCTTGAATGTCATT  725
            ||||||| |||||||||||||||||  ||| |||||||||| ||||||||||||| ||||
Sbjct  703  AAACTACACCACCTCCAGCTTATGGCTAACAGACTAACCAACACAGGCTTGAATGCCATT  762

Query  726  CTCGACCGCTGTCCTCACCTGGAACACCTTGATGTACGCAAGTGTTTCAACATGAACCTT  785
            |||||| | ||||||||||||||||||||||||||||||||||||||||  || | ||||
Sbjct  763  CTCGACGGTTGTCCTCACCTGGAACACCTTGATGTACGCAAGTGTTTCAGGATTAGCCTT  822

Query  786  GTCGGGAATCTTGAGAAGCGATGTTTGGAGAGGATCAAAGAGTTGAGACGCCCCGGTGAC  845
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  823  GTCGGGAATCTTGAGAAGCGATGTTTGGAGATGATCAAAGAGTTGAGACGCCCCGGTGAC  882

Query  846  TCAACCGCCGATTACCCATATAAT  869
            |||||||| |||||||||||||||
Sbjct  883  TCAACCGCAGATTACCCATATAAT  906



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 47119629886


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5