BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942944

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G20330.1 | Symbols:  | Transcription initiation factor TFIIE...   121    4e-27


> AT4G20330.1 | Symbols:  | Transcription initiation factor TFIIE, 
beta subunit | chr4:10982517-10984521 REVERSE LENGTH=1154
Length=1154

 Score =  121 bits (65),  Expect = 4e-27
 Identities = 83/92 (90%), Gaps = 0/92 (0%)
 Strand=Plus/Minus

Query  32   GTTTAGTCCCGGGAACTGCTGGCGGTAAGGTTCTGGAAGAGCTCTGCAAGATGGACATTG  91
            ||| ||| ||||||||||||| || ||||||||||||| ||||| | ||||||| |||||
Sbjct  990  GTTCAGTTCCGGGAACTGCTGCCGTTAAGGTTCTGGAAAAGCTCGGGAAGATGGGCATTG  931

Query  92   GTGAGTTTGGTTCTCTTGCTGATCTGTTGTTT  123
            ||||||||||||||||||||||||| ||||||
Sbjct  930  GTGAGTTTGGTTCTCTTGCTGATCTCTTGTTT  899



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12768008246


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5