BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942957
Length=207
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11190.1 | Symbols: | Disease resistance-responsive (dirige... 198 1e-50
AT4G11180.1 | Symbols: | Disease resistance-responsive (dirige... 189 8e-48
> AT4G11190.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr4:6826677-6827383 FORWARD
LENGTH=707
Length=707
Score = 198 bits (107), Expect = 1e-50
Identities = 181/215 (84%), Gaps = 11/215 (5%)
Strand=Plus/Plus
Query 1 CACAAAGGGACATTGACCATAATGGATGCGAATC-CGATAATGGAGCCGACTAGAGACCT 59
||||| ||| |||||| |||||||| || || | || | ||||||||||| ||||||||
Sbjct 372 CACAAGGGGGCATTGAACATAATGGGTG-AAAACGCGTTTATGGAGCCGACAAGAGACCT 430
Query 60 CTCC-ATCGTTGGTGGGACTGGTGACTTCCTCATGACTCATGGGATCGCTACGTTACA-G 117
|| ||||||||||||||||||| ||| ||||||||| ||||||||||||||| || |
Sbjct 431 -ACCGGTCGTTGGTGGGACTGGTGATTTCGTCATGACTCGTGGGATCGCTACGTT-CATG 488
Query 118 ACCGAACTCATTCAAGGCAGT-AGTATTTCTGTTTCGAAATGGATATTAAACTCTATGAA 176
|| || ||| || |||||||| |||||||| || || |||||||||||||||||||||||
Sbjct 489 ACTGATCTCGTTGAAGGCAGTAAGTATTTCCGTGTCAAAATGGATATTAAACTCTATGAA 548
Query 177 TGTTA--ATTA-A-TTATTAATATATGTCTTGGGT 207
||||| |||| | ||| ||||| |||||||||||
Sbjct 549 TGTTACTATTAGAGTTACTAATACATGTCTTGGGT 583
> AT4G11180.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr4:6820033-6820747 FORWARD
LENGTH=715
Length=715
Score = 189 bits (102), Expect = 8e-48
Identities = 160/187 (86%), Gaps = 8/187 (4%)
Strand=Plus/Plus
Query 1 CACAAAGGGACATTGACCATAATGGATGCGAATCC----GATAATGGAGCCGACTAGAGA 56
|||||||||||||| |||||||||||||| ||||| | | || ||||| | |||||
Sbjct 386 CACAAAGGGACATTTACCATAATGGATGCAAATCCTTTTGGT-TTGCAGCCGGCCAGAGA 444
Query 57 CCTCTCCATCGTTGGTGGGACTGGTGACTTCCTCATGACTCATGGGATCGCTACGTTACA 116
|| || |||||||||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct 445 TCTATCGATCGTTGGTGGGACTGGTGACTTCCTCATGACTCGTGGGATCGCTACATT-CA 503
Query 117 -GACCGAACTCATTCAAGGCAGTA-GTATTTCTGTTTCGAAATGGATATTAAACTCTATG 174
|||| |||||| ||||||||||| |||||| ||| | |||||| |||||||||| ||||
Sbjct 504 AGACCAAACTCACTCAAGGCAGTAAGTATTTTTGTGTGGAAATGAATATTAAACTTTATG 563
Query 175 AATGTTA 181
|||||||
Sbjct 564 AATGTTA 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9255448584
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5