BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942958
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11190.1 | Symbols: | Disease resistance-responsive (dirige... 804 0.0
AT4G11210.1 | Symbols: | Disease resistance-responsive (dirige... 660 0.0
> AT4G11190.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr4:6826677-6827383 FORWARD
LENGTH=707
Length=707
Score = 804 bits (435), Expect = 0.0
Identities = 522/564 (93%), Gaps = 6/564 (1%)
Strand=Plus/Plus
Query 22 AATGGCAAACCAAATCTACTTATTCTCCTTGATCTTCTTCTCTGTTTTACTTTACCAGTC 81
||||||||||||||||||| || |||||||||||||||| ||||| |||||||| || ||
Sbjct 5 AATGGCAAACCAAATCTACATAATCTCCTTGATCTTCTTGTCTGTGTTACTTTATCAATC 64
Query 82 CACTACCATCTTATCTTTCCAAAAATCATT-AGACCTAGCGAAACCATGCAAGCGTTTCG 140
||||||| |||||||||||| | || |||| | |||||||||||||||||||||||||||
Sbjct 65 CACTACCGTCTTATCTTTCCGACAACCATTCA-ACCTAGCGAAACCATGCAAGCGTTTCG 123
Query 141 TCTTCCACCTCCATAATGTTGCCTACGATGGTGATAACATGGATAATGCCACGTCAGCAG 200
||||| |||||||||||||||||||||| |||||||||| ||||||||| || |||||||
Sbjct 124 TCTTCTACCTCCATAATGTTGCCTACGACGGTGATAACACGGATAATGCTACATCAGCAG 183
Query 201 CAATTGTGAACCCATTAGGACTAGGAGACTTCAATTTTGGGAAGTTTGTGATCATGGACA 260
||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 184 CAATTGTTAACCCTTTAGGTCTAGGAGACTTCAGTTTTGGGAAGTTTGTGATCATGGACA 243
Query 261 ACCCTGTGACAATGGACCAGAACTAT-CTATCGAAACCGGTGGCTCGTGTTCAAGGCTTC 319
||||||||||||||||||||||| || || ||| ||| ||||||||||||||||||||||
Sbjct 244 ACCCTGTGACAATGGACCAGAAC-ATGCTCTCGGAACAGGTGGCTCGTGTTCAAGGCTTC 302
Query 320 TTCTTTTACCACGGTAAGGCAAAATACGATACTTGGCTTTCTTGGTCAGTAGCATTCAAT 379
||||| || ||||||||| | |||||||| |||||||| ||||||||||||| |||||||
Sbjct 303 TTCTTCTATCACGGTAAGACGAAATACGACACTTGGCTCTCTTGGTCAGTAGTATTCAAT 362
Query 380 TCAACACAACACAAGGGGACATTGAACATAATGGGTGAAAATC-CGTTTATGGAGCCGAC 438
|||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||
Sbjct 363 TCAACACAACACAAGGGGGCATTGAACATAATGGGTGAAAA-CGCGTTTATGGAGCCGAC 421
Query 439 CAGAGACCTACAGGTCGTTGGTGGGACTGGTGATTTCGTCATGACTCGTGGGATCGCGAT 498
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 422 AAGAGACCTACCGGTCGTTGGTGGGACTGGTGATTTCGTCATGACTCGTGGGATCGCTAC 481
Query 499 GTTCATGACTGATCTCGTTGAAGGCAATAAGTATTTCCGTATCAAAATGGATATTAAACT 558
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 482 GTTCATGACTGATCTCGTTGAAGGCAGTAAGTATTTCCGTGTCAAAATGGATATTAAACT 541
Query 559 CTATGAATGTTACTATTAGAGTTA 582
||||||||||||||||||||||||
Sbjct 542 CTATGAATGTTACTATTAGAGTTA 565
> AT4G11210.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr4:6832691-6833245 FORWARD
LENGTH=555
Length=555
Score = 660 bits (357), Expect = 0.0
Identities = 491/557 (88%), Gaps = 4/557 (1%)
Strand=Plus/Plus
Query 23 ATGGCAAACCAAATCTACTTATTCTCCTTGATCTTCTTCTCTGTTTTACTTTACCAGTCC 82
|||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||| ||
Sbjct 1 ATGGCAAACCAAATCTACTTATTCTCCTTGATCTGCTTGTCTGTTTTACTTTGCCAATCA 60
Query 83 -ACTACCATCTTATCTTTCCAAAAATCATTAGACCTAGCGAAACCATGCAAGCGTTTCGT 141
| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 TA-TACGGTCTCATCTTTCCAAAAATCACTAGACCTAGCGAAACCATGCAAGCGTTTCGT 119
Query 142 CTTCCACCTCCATAATGTTGCCTACGATGGTGATAACATGGATAATGCCACGTCAGCAGC 201
| ||||||||||| | |||| ||||||||||||||| || |||||| |||||||||||
Sbjct 120 CCTCCACCTCCATGACATTGCGTACGATGGTGATAACGCGGCTAATGCAACGTCAGCAGC 179
Query 202 AATTGTGAACCCATTAGGACTAGGAGACTTCAATTTTGGGAAGTTTGTGATCATGGACAA 261
||||||||| || ||||||||||||||||||| |||||||||||||||||| |||||| |
Sbjct 180 AATTGTGAATCCTTTAGGACTAGGAGACTTCAGTTTTGGGAAGTTTGTGATTATGGACGA 239
Query 262 CCCTGTGACAATGGACCAGAACTATCTATCGAAACCGGTGGCTCGTGTTCAAGGCTTCTT 321
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 240 CCCTGTGACAATGGACCAGAACTATCTCTCGAAACCCGTGGCTCGTGTTCAAGGCTTCTT 299
Query 322 CTTTTACCACGGTAAGGCAAAATACGATACTTGGCTTTCTTGGTCAGTAGCATTCAATTC 381
|| |||||||||||||||| |||||| ||||| | ||||| |||| | |||||| ||
Sbjct 300 CTGCTACCACGGTAAGGCAACATACGACGCTTGGATCGCTTGGACAGTGGTATTCAACTC 359
Query 382 AACACAACACAA-GGGGACATTGAACATAATGGGTGAAAATCCGTTTATGGAGCCGACCA 440
|||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||| |
Sbjct 360 AACACAACACAAAGGGG-CATTCACCATAATGGGTGAAAATCCGTTTATGGAGCCGACTA 418
Query 441 GAGACCTACAGGTCGTTGGTGGGACTGGTGATTTCGTCATGACTCGTGGGATCGCGATGT 500
||||||||| | ||||||||||||||||||| ||| |||||||||| |||||||| | ||
Sbjct 419 GAGACCTACCGATCGTTGGTGGGACTGGTGACTTCATCATGACTCGAGGGATCGCTACGT 478
Query 501 TCATGACTGATCTCGTTGAAGGCAATAAGTATTTCCGTATCAAAATGGATATTAAACTCT 560
| | ||| |||| | |||| |||| |||||||||||| |||| | |||||||| ||||
Sbjct 479 TAACGACCGATCACATTGACGGCAGTAAGTATTTCCGCGTCAAGCTTGATATTAAGCTCT 538
Query 561 ATGAATGTTACTATTAG 577
| ||||||||| |||||
Sbjct 539 ACGAATGTTACCATTAG 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28733932084
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5