BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942959
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11210.1 | Symbols: | Disease resistance-responsive (dirige... 305 4e-82
> AT4G11210.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr4:6832691-6833245 FORWARD
LENGTH=555
Length=555
Score = 305 bits (165), Expect = 4e-82
Identities = 190/202 (94%), Gaps = 1/202 (0%)
Strand=Plus/Plus
Query 571 GCAAGCGTTTCATCCTCCACCTCCATGACATTGCCTACGATGGTGATAACGCGGCTAATG 630
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 107 GCAAGCGTTTCGTCCTCCACCTCCATGACATTGCGTACGATGGTGATAACGCGGCTAATG 166
Query 631 CCACGTCGGCAGCAATTGTGAACCCTTTAGGACTAGGAGAATTCAGTTTTGGAAAGTTTG 690
| ||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 167 CAACGTCAGCAGCAATTGTGAATCCTTTAGGACTAGGAGACTTCAGTTTTGGGAAGTTTG 226
Query 691 TGATTATGGACGACCCTGTGACAATGGACCAGAACTATCTTTCGAAACTGGTGGCTCGTG 750
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 227 TGATTATGGACGACCCTGTGACAATGGACCAGAACTATCTCTCGAAACCCGTGGCTCGTG 286
Query 751 TTCAAGGCTTCTTCTT-TACCA 771
||||||||||||||| |||||
Sbjct 287 TTCAAGGCTTCTTCTGCTACCA 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45512137182
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5