BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942971
Length=4264
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11270.1 | Symbols: | Transducin/WD40 repeat-like superfami... 4920 0.0
> AT4G11270.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:6854364-6859664 FORWARD LENGTH=4612
Length=4612
Score = 4920 bits (2664), Expect = 0.0
Identities = 3273/3554 (92%), Gaps = 93/3554 (3%)
Strand=Plus/Plus
Query 6 GCTTGATTCGTGCCGATGAAGTGCCGATCCGTGGCCTGCCTCTGGTCTCGAGCTCCTCCA 65
||||||||| |||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 83 GCTTGATTCAAGCCGATGAAGTGCCGATCTGTGGCCTGCCTATGGTCTCGTGCTCCTCCG 142
Query 66 TCTCATCGAGTCACCGCCACAGCCTCTCTAACAAATCCACCGACTCTCTATACCGGTGGA 125
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 143 TCTCATCGGGTCACCGCCACAGCCTCTCTAACCAATCCACCGACTCTCTATACCGGTGGA 202
Query 126 TCCGATGGGTCAATCATCTGGTGGAGCATCTCGTCTTCTTCCGAGTCCAATTCGGTAACT 185
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 203 TCCGATGGGTCAATCATCTGGTGGAGCATCTCTTCTTCTTCCGAATCCAATTCTGTAACT 262
Query 186 CGTCTCTCGTCTTC-CGAGATTAAGCCGATTGCTATGTTGTGTGGCCATACTGCACCAAT 244
|||||| | || || |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 263 CGTCTC-CCTCATCATGAGATTAAACCGATTGCTATGTTGTGTGGCCATACTTCACCAAT 321
Query 245 AGTGGATCTTGCCGTTTGTGATCCTAC--TACGGTTTCAGGGAACGGAGTTACATCAGAT 302
|||||||||||| ||||||||||||| ||| ||||| | || |||| | | | |
Sbjct 322 AGTGGATCTTGCTATTTGTGATCCTACAATAC--TTTCAAGTAATGGAG-T---T--G-T 372
Query 303 TG-TTCGGATAATGGTAACGCGGATCCGTTTGTTAACTGTTGTGCATTGATCAGTGCTTG 361
|| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 373 TGCATCAGATAATGGTAATGCGGATCCATTTGTTAACTGTTGTGCATTGATCAGTGCTTG 432
Query 362 TTCTGATGGTGTATTGTGTGTATGGAGTAGAAGTAGTGGTCATTGTAGGCGGCGTAGAAA 421
| |||||||||| ||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 433 TACTGATGGTGTCTTGTGTGTATGGAGTAGAAGTAGTGGTCAGTGTAGGAAACGAAGAAA 492
Query 422 GTTACCTCCTTGGGTTGGAAGTCCGTCGATTTTGTGTACTTTGCCATCAGAGCCTAGATA 481
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 493 ATTACCTCCTTGGGTTGGAAGTCCATCGATTTTGTCTACTTTGCCATCAGAGCCTAGATA 552
Query 482 TGTATGTGTTGGGTGTTCTTATATTGATACTCAATCTGTTGATACTGTTGATGGGGCTGA 541
|||||||||||| ||||| | || | ||| | | |||||||||||||||
Sbjct 553 TGTATGTGTTGGTTGTTC------T--TA-T--ATC----G--A-TGTTGATGGGGCTGA 594
Query 542 GACTTTAGCAGATACTGATTTTCAGAACAGGAAACCGTCGAGGTGTACTGTGGTGGTTGT 601
|||||||||||||||||||||| || | || |||||| || || ||||| |||||
Sbjct 595 GACTTTAGCAGATACTGATTTT-----CA-G-AA--GTCGAGATGCACGGTGGTTGTTGT 645
Query 602 TGATACTTATACTCTTACGATTGTTCATACAGTTTTCCATGGGAATTTGTCTATTGGTTA 661
||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 646 TGATACTTACACTCTTACTATTGTTCATACAGTTTTCCATGGGAATTTATCTATTGGTTG 705
Query 662 TTTGAATTTTATGGGTGTGGTGCAATTGGAGGAGCAGGAATCGTTGCTCATGGCGGATTC 721
||||||||||||||| ||||| || || || ||||||||||| ||||| ||||| |||||
Sbjct 706 TTTGAATTTTATGGGCGTGGTTCAGTTAGATGAGCAGGAATCATTGCTTATGGCTGATTC 765
Query 722 GTTTGGTAGGTTGCAGTTGGTTCCTGTGTCAGAGAACTCTGAGAAGGGTGAAGATGTATC 781
|||||||||||||||||||| | | |||| | || || | | | | |||
Sbjct 766 GTTTGGTAGGTTGCAGTTGG-T-C----TCAGTG---TC--AG-A----G-A-A---ATC 804
Query 782 TGAATCGAGCAAAGGCTCTGTTGTGTCTAGGAACTGGTTAAATGAAGGGGAAATAGCTGT 841
|||| |||||||||||||| | |||||||| |||||||| | |||||||||||| |||||
Sbjct 805 TGAACCGAGCAAAGGCTCTCTAGTGTCTAGAAACTGGTTGAGTGAAGGGGAAATTGCTGT 864
Query 842 ATCAGTGATAACCCGAGGGAATCTTGTTGCTTTTTTCTCAAAGAATAGGTGTGTCTTTTG 901
|||||| ||||| |||||| |||||||||| |||||||| |||| |||||||||||||||
Sbjct 865 ATCAGTAATAACTCGAGGGGATCTTGTTGCGTTTTTCTCGAAGAGTAGGTGTGTCTTTTG 924
Query 902 GTTGTTGAATCGCGAGGAGGCAATAGGAGAGATATCTTTTGTTGATGATTCGCTTTGTTC 961
|||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 925 GTTGTTGAATCGCGAGGAGGCAATAGGAGAGATATCTTTTGTTGATGA---------TTC 975
Query 962 TGAAAATCATTCTCCAAATTTTCAT-TTCAAAGAAGCAATGATACTTTACTCTAGTACAT 1020
| |||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 976 -G-----CATTCTTCAAATTTTC-TGTTCAAAGAAGCAATGATACTTTACTCTAGTACAT 1028
Query 1021 CAACTATCGAAGGTGATAAAGATGATAGAATTTCCGAAACTTTTGTGCTGTGGGATGATA 1080
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| ||
Sbjct 1029 CAACTATTGAAGGTGATAAAGATGATAGTATTTCTGAAACTTTTGTGCTGTGGGATGGTA 1088
Query 1081 ATGGTTCTGCTGTGCTGTTTGTTATGTCATATATAGATGGAGATTTTACGTATAAAAACC 1140
||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||
Sbjct 1089 GTGGTTCTGCTGTGCTGTTTACTATGTCATATATAGATGGTGAATTTACATATAAAAACT 1148
Query 1141 TCGGTGAGATTGTTACT-CCCC--CTGATAAGCATTCCGTGAAATCAACGTTTTGTTTTG 1197
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||
Sbjct 1149 TCGGTGAGATTGTTACTGCCCCTGATGATAAGCGTTCCGTGAAATCAACGTTTTGTTTTG 1208
Query 1198 TACAGTTGAGGCAGTATCTTCTTCGCGTTGAGTCTACCTGTTGTGATGTTGAACAACCTT 1257
| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1209 TTCAGTTGAGGCAGAATCTTCTTCGCGTTGAGTCTAGTTGTTGTGATGTTGAACAACCTT 1268
Query 1258 CTCAATGGAGGCCCCATATAACTG-TCTGGTCACTATGCCTAGGAGGAATAGGTAGTGAA 1316
|||| ||||||||||||||||| | |||||||| | ||||||||| ||| |||| |||
Sbjct 1269 CTCAGTGGAGGCCCCATATAAC-GATCTGGTCATTGTGCCTAGGA--AAT-GGTAAAGAA 1324
Query 1317 AAAGAACTTCAGCGCAAATTGCTTGGAGAAGGCTCCTATTTTGCTGATTGGATTTCAAGC 1376
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1325 AAAGAACTTCAGCGCAAAGTGCTTGGAGAAAGCTCCTATTTTGCTGATTGGATTTCAAGC 1384
Query 1377 TGTTGTTTAGATACCACGGGCTCCATTAGTGCAGAAACCGGTATTTCCCATTTAGGAAGT 1436
| ||||||||| ||| |||||| ||||||||||||| |||| ||| || | |||||||
Sbjct 1385 TCCTGTTTAGATCCCAAGGGCTCGGTTAGTGCAGAAACTGGTACTTCGCAGTCAGGAAGT 1444
Query 1437 CAATGCAGTACCGAAAATGGTCTACAAAGCTTTGTTAGTGACAATAGACAGTGCGTGTCA 1496
|| |||||| || |||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1445 CAGTGCAGTGCCAAAAATGATCTACAAAGCTTTGTTAGTGACAATGGACAGTGTGTGTCA 1504
Query 1497 TCGTCCATGGTTATTTCTGAGAACATGTATGTCCCATATGCTGTTGTCTATGGTTTCTTT 1556
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1505 TCGTCCATGGTTATTTCTGAGAATATGTATGTCCCATATGCTGTTGTCTATGGTTTCTTT 1564
Query 1557 AGTGGTGAGATAGAAATTGCAAAGTTTGATTTTCTTCATGGACTTGATTCTCCTGCTTCA 1616
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1565 AGTGGTGAGATAGAGATTGCAAAGTTTGATTTTCTTCATGGAATTGATTCTCCTGCTTCA 1624
Query 1617 AGCCCGAGATCTGACACTGATTCATTCGTCTCTAGAA-AGCGTCTATTGGGACATACAGG 1675
||||||||||| || |||||| || |||||| || || ||||||||||||||||||||||
Sbjct 1625 AGCCCGAGATCAGATACTGATCCACTCGTCTATA-AACAGCGTCTATTGGGACATACAGG 1683
Query 1676 ATCTGTTCTATGCTTAGCAGCGCATCGAATGTTTGGGGATGCAAATGGATGTGGTTCTTC 1735
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1684 ATCTGTTCTATGCTTAGCAGCGCATCGAATGTTTGGGGATGCAAATGGATGTAATTCTTC 1743
Query 1736 TCATGTTTTGATCTCGGGAAGTATGGACTGTACCATCCGCATTTGGGATCTCGAAAGTGG 1795
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1744 TCATGTTTTGATCTCCGGAAGTATGGACTGTACCATCCGCATTTGGGATCTCGAAAGCGG 1803
Query 1796 AAATGTAATCATGATCATGCATCATCATGTTGCTCCGGTGCGCCAGATCATTCTAGCCCC 1855
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1804 AAATGTTATCATGATCATGCATCATCATGTTGCTCCAGTGCGCCAGATCATTCTATCCCC 1863
Query 1856 AGCTCGAACAGAACGCCCATGGAGCAATTGCTTTCTATCTGTTGGGGATGATTCATGTGT 1915
||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1864 AGCTCCAACAAAACGCCCATGGAGCAAGTGCTTTCTATCTGTTGGGGATGATTCATGTGT 1923
Query 1916 TGCTCTTTCTTCTCTTGAGACTTTGCGTGTTGAAAGGATGTTTCCTGGGCACCCAAACTA 1975
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1924 TGCTCTTTCTTCTCTTGAGACTTTGCGGGTCGAAAGGATGTTTCCTGGGCACCCAAACTA 1983
Query 1976 TCCTACAAAAGTCGTATGGGATGGTACAAGAGGCTACATTGCATGTCTTTTCCGCTCCCT 2035
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1984 TCCTACAAAAGTTGTATGGGATGGTACAAGAGGCTACATTGCATGTCTTTTTCGCTCCCT 2043
Query 2036 TTCGAGAAAATCAGATCCAATTGATGTCTTGTACATTTGGGATGCGAAGACAGGTGCTCG 2095
|||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct 2044 TTCGAGAAAATCAGATCCAATTGATGTCTTATACATTTGGGATGTGAAAACAGGTGCTCG 2103
Query 2096 GGAACGTGTCCTCAATGGGGCAGCTTCACATTCGATGTTTGATCATTTCTGTGCAGGCAT 2155
|||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2104 AGAACGTGTACTCCATGGGGCAGCTTCACATTCAATGTTTGATCATTTCTGTGCAGGCAT 2163
Query 2156 TAGTGAGAAATCTTATTCTGGCACTGTGTTAAATGGAAATACGTCAGTTTCTTCTTTGCT 2215
||||||||||||| ||||||| ||||| |||||||||||||| |||||||| ||||||||
Sbjct 2164 TAGTGAGAAATCTCATTCTGGTACTGTCTTAAATGGAAATACATCAGTTTCCTCTTTGCT 2223
Query 2216 TTTCCCAGTAGACGAAGAGAGGAAACCATTTTATTTGAAGAACTATGAGCGAGCAGCCTC 2275
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2224 TTTCCCAGTAGACGAAGAGAGGAAACCATTTTATTTGAAGAACTACGAGCGAGCAGCCTC 2283
Query 2276 TTTGTCAACATCTAAGCCAAGTGCTTCGCAGGAAAAGGCTAGAGAAGAGAGTTCTATTGC 2335
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct 2284 TTTGTCAACATCTAAGCCAAGTTCTTCGCAGGAAAAGACTAGAGAAGAGAGTTCTACTGC 2343
Query 2336 TTCGTCTTTTCTCCAAAGCATCAGATACCCTCCCATCAAATGCACTTGCCCATTCCCTGG 2395
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2344 TTCGTCTTTTCTCCAAAGCATCAGATACCCTTCCATCAAATGCACTTGCCCATTCCCTGG 2403
Query 2396 AATATCTACTCTGATTTTCGATCTTTCGTCTTTAGCAGTTTCTTGTCAAACACATGAAGA 2455
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2404 AATATCTACTCTGATTTTCGATCTTTCGTCTTTAGCAGTTTATTGTCAAACACATGAAGA 2463
Query 2456 CTCTGATATGCATAAGATGCTAGAAGAGAAGAGTGATAAGCCAACTGCTCAGCAGAAGAC 2515
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2464 CTCTGATATGCATAAGATGCTAGAAGAGAAGAGTGATAAGGCAACTGCTCAGCAGAAGAC 2523
Query 2516 TTCAAATGACAAGTCTCCTGTCCAGAAGACTCTTGATAACCCTGCAGAAGTTGTTGACAT 2575
|||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||
Sbjct 2524 TTCAAAAGACAAGTCTCCTGTCCAGAAGACTCTAGATAACCATGCAGAAGTTGTTCACAT 2583
Query 2576 GGACAAGGCAATTGGGGAATATCTAATTCGATTTAGTTTATCCTTTCTGCATTTGTGGGG 2635
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2584 GGACAAGGCTATTGGAGAATATCTAATTCGATTTAGTTTATCCTTTCTGCATTTGTGGGG 2643
Query 2636 TATAGATTCTGAACTCGATCAAATGCTAGTAGCACATCTAAAGCTAAAAAGACCAGAGAG 2695
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2644 TATAGATTTTGAACTCGATCAAATGCTAGTAGCACATCTAAAGCTAAAAAGACCAGAGAG 2703
Query 2696 TTTTATTGTAACCTCCGGTTTGCAGGGGGACAAAGGGTCTTTGAAATTAGCATTCCCCGG 2755
||||||||||||||||||||||||||| |||||||| || |||| |||||||||||| ||
Sbjct 2704 TTTTATTGTAACCTCCGGTTTGCAGGGAGACAAAGGATCATTGACATTAGCATTCCCTGG 2763
Query 2756 TTTGAATGCAACACTTGAGCTCTGGAAATCATCTTCGGAGTTTTCTGCGTTGAGGTCAGT 2815
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2764 TTTGAATGCAACACTTGAGCTCTGGAAATCATCTTCGGAGTTTACTGCGTTGAGGTCAGT 2823
Query 2816 GATGATGGTGTCGCTTGCTCAATGCATGATAAGTCTGTCACATTCCACTGCCACATATAG 2875
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2824 GATTATGGTGTCACTTGCTCAGTGCATGATAAGTCTGTCACATTCCACTGCCACATATAG 2883
Query 2876 CAGCAACTTGGCAGCATTCTACACACGAAATCTGG-ATGAGAAATATCCAGATCTGAAGC 2934
||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||||||
Sbjct 2884 CAGCAACTTGGCAGCGTTCTACACGCGAAATCTGGCA-GAGAAATATCCAGATCTGAAGC 2942
Query 2935 CACCATTACTTCAGCTTTTGGTAACTTTCTGGCAAGATAAAAGCGAACAAGTTCGTATGG 2994
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2943 CACCATTACTTCAGCTTTTGGTAACTTTCTGGCAAGATAATAGCGAACAAGTCCGTATGG 3002
Query 2995 CTGCTCGGTCATTATTCCACCACACTGCTTCTTTGGAAATACCTCTTCCATTATGCAGTG 3054
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3003 CAGCTCGGTCATTATTCCACCACACTGCTTCTTTGGCAATACCTCTTCCATTATGCAGTG 3062
Query 3055 ATCACGCATCTGAACATGCAAAACTGGTGATATCCCTGTCTGGAATCAGTCTGAACGAAC 3114
|||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct 3063 ATCACGCATCTGAACATGCAGAACTGGTGAGATCCCTGTCTGGAATCAGTCTAAACGAAC 3122
Query 3115 CTAAAGTTCTTAGCACAGGGGAAGAATATCCCACAAACAGTGTGGACTCTGAGCATATCC 3174
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3123 CTAAAGTTCTTAGCACAGGGGAAGAATATCCCACAAACAGTCTGGACTCTGAGCATATCC 3182
Query 3175 ATCAAGCTCAACGGCTTTCTCAGGCTGAGGAGTCAGAACTACTCTCCTGGCTTGAATCTT 3234
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 3183 ATCAAGCTCAACGGCTTTCTCAGGCTGAGGAGTCAGAAATACTCTCATGGCTTGAATCTT 3242
Query 3235 TTGAAATGCAAGACTGGATTTCTTGCATTGGGGGAACAAATCAGGACGCAATGGCAGCTC 3294
||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct 3243 TTGAAATGCAAGACTGGATTTCTTGTGTTGGGGGAACAAGTCAGGACGCAATGGCTGCTC 3302
Query 3295 ACATCATTGTTGCGGCTGCCTTATCAATCTGGTACCCAAGTCTAGTAAAACCTGGTCTAG 3354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3303 ACATCATTGTTGCGGCTGCCTTATCAATCTGGTACCCAAGTCTAGTAAAACCTGGTCTAG 3362
Query 3355 CGATGCTAGTCGTCCACAAATTGTTGAACCTGGTTATGGCCATGAGTGAGAAATACAGCT 3414
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3363 CCATGCTAGTCGTCCACAAATTGTTGAACCTGGTTATGGCCATGAGTGAGAAATACAGCT 3422
Query 3415 CGACTGCTGCGGAGCTTCTCTCAGAAGGAATGGAGACTACATGGAAAACATGGATCGGAC 3474
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3423 CGACTGCTGCGGAGCTTCTCTCAGAAGGAATGGAGACTACATGGAAAACATGGATTGGAC 3482
Query 3475 CTGACATTCCTCGGATAGTTTCAGACATATTTTTCCAAAAAGAGTGT--CAATTCCTCAA 3532
||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||
Sbjct 3483 CTGACATTCCTCGGATAGTTTCAGACATATTTTTCCAAATAGAGTGTGTCAGTTCCTCAG 3542
Query 3533 TAGGAGCACATCAA 3546
| |||||| |||||
Sbjct 3543 TCGGAGCATATCAA 3556
Score = 436 bits (236), Expect = 6e-121
Identities = 286/309 (93%), Gaps = 7/309 (2%)
Strand=Plus/Plus
Query 3948 AGTATGACAAAAATAAGGGTTTTGGATGCGAGTGGCCCTCCGGGTCTCCCAAATTTTCTC 4007
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3962 AGTATGACAAAAATAAGGGTTTTGGATGCGAGTGGACCTCCGGGTCTCCCAAATTTTCTC 4021
Query 4008 AGAGGAGCTTCAGAATCTGCAGTAACAACAGCAATATCAGCTCTCAGCTTTTCACCAGAT 4067
|||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||
Sbjct 4022 AGAGGAGCTTCAGAATCTGCCGTGACAACAGCTATATCAGCTCTCAGCTTTTCACCTGAT 4081
Query 4068 GGAGAGGGATTGGTTGCGTTTTCAGAAAACGGTTTGATGATCAGATGGTGGTCACTAGGA 4127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4082 GGAGAGGGATTGGTTGCGTTTTCAGAAAACGGTTTGATGATCAGATGGTGGTCACTAGGA 4141
Query 4128 TCAGTTTGGTGGGAAAAACTAAGCCGAAG-CATCACACCTGTACAATGCACAAAACTGAT 4186
|| ||||||||||| |||||||||| ||| | |||||||| | |||||||| ||||| ||
Sbjct 4142 TCGGTTTGGTGGGAGAAACTAAGCCAAAGTC-TCACACCTATTCAATGCACCAAACTAAT 4200
Query 4187 ATTTATCCATCAATGGGATGGGAGGGATTTTCATCAAACTCTTCTCGGACAAGTGTGATC 4246
||||||||||| ||||||||| | |||||||||| |||||| || ||||||||||||
Sbjct 4201 ATTTATCCATCCATGGGATGG-A----TTTTCATCAAGCTCTTCACGAACAAGTGTGATC 4255
Query 4247 TCAAGTATC 4255
|||||||||
Sbjct 4256 TCAAGTATC 4264
Score = 316 bits (171), Expect = 9e-85
Identities = 279/329 (85%), Gaps = 15/329 (5%)
Strand=Plus/Plus
Query 3550 TAATAGAGAGCCAAATATGGTCTACCGCTTCCGATTCTCCTGTTCATGTAGTATCTCTCA 3609
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 3642 TAATAGAGAGCCAAATATGGTCTACAGCTTCTGATTCTCCTGTTCATGTAGTATCTCTCA 3701
Query 3610 GAACTCTCATCAGAGTAATCCGTGCTGCTCCGAGAAATCTGGTGCTGCATCTTGAGAAGG 3669
|||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 3702 GAACTCTCATCAGAATAATCCGGGCTGCTCCTAGAAATCTGGTACTGCATCTTGAGAAGG 3761
Query 3670 TTTGTCG-CATCTGTTTTTACAATTC-AGTG-AGG-AGAGCAAACACTGTCATGCGTAAA 3725
|| | | |||| || ||| | | || | | ||||| ||| ||||||||||||
Sbjct 3762 CA-GTTAACTT-TGTTCTT-CAAA-CGA-TGGACCCA-AGCAA-CACCGTCATGCGTAAA 3814
Query 3726 ACTTGCCTGCAAACCTCAATGGCTACACTGAGGGAAGTTGTGCGTGTATTTCCAGTGGTA 3785
|||||||||||||||||||||||||| || || ||||||||||| ||||||||| |||||
Sbjct 3815 ACTTGCCTGCAAACCTCAATGGCTACGCTAAGAGAAGTTGTGCGCGTATTTCCAATGGTA 3874
Query 3786 ATCCCAAACGATTCATCAACAAGGCTGGCAATTGGCAATGCTATCACAGAGATCAACC-- 3843
||| |||||| || ||||||||| | ||||| ||| ||| ||||||||||||||||
Sbjct 3875 ATCTTAAACGACTCGTCAACAAGGTTAGCAATCGGCGATGTTATCACAGAGATCAACAAT 3934
Query 3844 -C-TGTATCCGCATATATGACATGCAAAG 3870
| ||||| | |||||| ||||||| |||
Sbjct 3935 GCATGTATTCACATATACGACATGCGAAG 3963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 212557337491
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5