BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942974

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11080.1 | Symbols:  | HMG (high mobility group) box protein...   669    0.0  


> AT4G11080.1 | Symbols:  | HMG (high mobility group) box protein 
| chr4:6760867-6763272 REVERSE LENGTH=1372
Length=1372

 Score =  669 bits (362),  Expect = 0.0
 Identities = 419/447 (94%), Gaps = 2/447 (0%)
 Strand=Plus/Plus

Query  34   TGAAGAAGCCGAATCCTGAAGCTGATTTCAAGGAGACTTCGAATATTTTTGGTGCTAAGT  93
            ||||||| | ||||||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct  440  TGAAGAAACAGAATCCTGAAGCTGATTTCAAGGAGACTTCGAACATTCTGGGTGCTAAGT  499

Query  94   GGAAAGGGATTAGTG-TAGAAGAGAATAAGCCTTATGAGGAGAAGTATCAGGCGGATAAG  152
            |||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct  500  GGAAGGGGATTAGTGCT-GAAGAGAAGAAGCCTTATGAGGAGAAGTATCAGGCGGATAAG  558

Query  153  GAAGCTTATCTTCAGGTTATTACAAAGGAGAAGCGAGAGAGGGAAGCCATGAAGCTTCTT  212
            ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  559  GAAGCTTATCTTCAGGTTATTACAAAGGAGAAGCGTGAGAGGGAAGCAATGAAGCTTCTT  618

Query  213  GATGATCAGCAGAAGCAGAAAACTGCTATGGAATTGCTTGATCAGTATCTTCAGTTTGTT  272
            |||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  619  GATGATGAGCAGAAGCAGAAAACTGCAATGGAATTGCTTGATCAGTATCTTCACTTTGTT  678

Query  273  CAAGAAGCTGAACAAGACAACAAGAAAAAGGCCAAGAAGATAAAGGATCCGTTGAAGCCT  332
            || ||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||
Sbjct  679  CAGGAAGCTGAACATGACAACAAGAAAAAGGCCAAGAAGATAAAGGATCCCCTGAAGCCT  738

Query  333  AAACATCCAATATCTGCTTACCTGATCTATGCTAACGAGGGGAGAGCTGCTTTAAAAGGA  392
            ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct  739  AAACAACCAATATCTGCTTACCTGATCTATGCAAACGAGAGGAGAGCTGCTTTAAAAGGA  798

Query  393  GAAAACAAAAGCGTTATTGAAGTCGCTAAGATAACCGGAGAAGAGTGGAAGAATTTATCG  452
            |||||||||||||||||||| |||||||||||  | ||||||||||||||||| || |||
Sbjct  799  GAAAACAAAAGCGTTATTGAGGTCGCTAAGATGGCTGGAGAAGAGTGGAAGAACTTGTCG  858

Query  453  GAAGAACAAAAGGCTCCTTATGATCAG  479
            |||||| ||||||||||||||||||||
Sbjct  859  GAAGAAAAAAAGGCTCCTTATGATCAG  885



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24112390560


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5