BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942977

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09580.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   276    1e-73


> AT5G09580.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G53345.1); 
Has 53 Blast hits to 53 proteins in 12 species: Archae - 0; 
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 50; Viruses 
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2972639-2974776 
FORWARD LENGTH=1520
Length=1520

 Score =  276 bits (149),  Expect = 1e-73
 Identities = 173/184 (94%), Gaps = 4/184 (2%)
 Strand=Plus/Plus

Query  6    AGGTAAAAGCTCTCAGTATGCTAAGTGTAGAAGACAAAACTCGGGTTGAATCGGTTCTTG  65
            ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  599  AGGTAGAAGCTCTCAGTTTGCTAAGTGTAGAAGACAAAACTCGGGTTGAATCGGTTCTTG  658

Query  66   ATTACATTGAGGATATCGATCTTCGACG-TCGGATGTTACCATATATCAAAGCTTTCAGC  124
            ||||||||||||||||||||||||| || | ||||||||||| |||||||||||||||||
Sbjct  659  ATTACATTGAGGATATCGATCTTCGGCGAT-GGATGTTACCAGATATCAAAGCTTTCAGC  717

Query  125  TTTGGTCTTAAGGATTGGCGCTTAAGGATCAATTGTATTA-CTAATCCTTACATGTATGA  183
            |||||||||||||||||||||| ||||||||||||||| | | |||||||||||||| ||
Sbjct  718  TTTGGTCTTAAGGATTGGCGCTCAAGGATCAATTGTATCATC-AATCCTTACATGTACGA  776

Query  184  ACAG  187
            ||||
Sbjct  777  ACAG  780


 Score =  106 bits (57),  Expect = 2e-22
 Identities = 74/81 (91%), Gaps = 6/81 (7%)
 Strand=Plus/Plus

Query  187   GGGAATGCGCGCAAATGGTAACCATCAACTAAGCGATG-----G-CAAGCTTCTTAGTCT  240
             ||||||||||||| ||||||||||||||||||||||||     | |||||||||||||||
Sbjct  921   GGGAATGCGCGCAGATGGTAACCATCAACTAAGCGATGAACTTGGCAAGCTTCTTAGTCT  980

Query  241   ACAAAGTTCTGCAGCTGGTCT  261
             |||||||||||||||||||||
Sbjct  981   ACAAAGTTCTGCAGCTGGTCT  1001



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5